Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031062.1 Length=75147 Score E Sequences producing significant alignments: (Bits) Value seq282583 196 2e-45 seq76541 194 8e-45 seq121188 192 3e-44 seq266624 161 5e-35 seq282581 82.4 4e-11 >seq282583 Length=1909 Score = 196 bits (216), Expect = 2e-45 Identities = 613/949 (65%), Gaps = 49/949 (5%) Strand=Plus/Minus Query 30959 AATGATGGTTGGCATTATCTGTTCGGTAACTTCAACCTCGGTGGAACGTTATCCGGGCGG 31018 || ||||| ||||||||| ||||||||||||||| || ||||| ||| |||| || || Sbjct 1689 AACGATGGCTGGCATTATTTGTTCGGTAACTTCAGACTGGGTGGCACGCTATCTGGTAGG 1630 Query 31019 TTAAGCTCATCCGATCCAAACCTGCAAAACCTACCAGCGAAAGA------------GAAT 31066 || || | | || ||||| || ||| | || | | ||| Sbjct 1629 TTGTCTTCCAACAACCCCAACCTACAGAACATCCCCGGATCTGCTGGTGCTCCGTTGAAA 1570 Query 31067 AAATA-CT--CCAAGCTGATCAAGTCTTGCTTCCAAGCTCCACCGGGTTGGATGTTCTGT 31123 ||| || |||||||||||||| ||||| |||| || || || ||| | |||||| Sbjct 1569 AAACGTCTTGCCAAGCTGATCAAGGAATGCTTTGAAGCACCTCCCGGATGGCTATTCTGT 1510 Query 31124 GGTCTGGACTTTGCAAGTCTGGAAGACAGGATCTCTGCTGTTACCACTAAAGACCCAAAT 31183 ||||| ||||| | || |||||||||||||| || |||| ||| | Sbjct 1509 GGTCTCGACTTCGACTCACTCGAAGACAGGATCTCAGC-------ACTATCGACACGCG- 1458 Query 31184 AAACTGAAGGTGTATACCGATGGTTATGACGGTCACTGTCTTCGTGCTTATGCTTACTTT 31243 | | ||| ||| |||||||| || || ||||| |||| ||| Sbjct 1457 -ACCNNNNNNNNNATA----------TGATGGTCACTGCCTACGAGCTTACTCTTATTTT 1409 Query 31244 GGTGAGCAGATGCCAGACATTGTGGATACT---GTAGAGTCCATCAACTCCATTGAGAAG 31300 || ||| ||| || || | |||| || || ||||||||| |||| |||| Sbjct 1408 GGAGAGGTTATGGGTGATATCGACCCTACTTCAGTCGATAGCATCAACTCGATTGCGAAG 1349 Query 31301 AAGTACAAAGCTCTCCGTGGTGACAGTAAGGCACCAACATTTGCACTGACTTATCAGGGT 31360 || ||||| | | ||| ||| || ||||| || |||||||| |||||||| Sbjct 1348 AAATACAAGCAGCAGAGACAAGACTCTAAAGCTCCAACCTTCGCACTGACATATCAGGGA 1289 Query 31361 ACTCATCAT-ACTCTGATGAAGAACTGTGGTTTCCCTAAAGAGAAAGCTGTACTGGTTGA 31419 ||| | ||| || |||||||| |||||||||||| || || ||| | |||| Sbjct 1288 ACTTA-CATGACCCTGATGAACAACTGTGGTTTCAGCAAGGAATTGGCTCAAGCAATTGA 1230 Query 31420 GAACCGTTTCAAGGAACTCTACAAAGTGAGTATCGACTGGGTTGATGCCAAGCTGCAAGA 31479 |||| | |||| | | ||| || ||| ||||||| ||| | ||| || | Sbjct 1229 GAACGCATACAAGAAGATGTACGTGGTCTCGATCAACTGGGTGAATGACCGACTGGAACA 1170 Query 31480 AGCCAGTAAGGTTGGCTATGTGACTGTTGCATTTGGTCTGCGTGTCAGGACTCCACTGCT 31539 ||||| |||| |||||| | ||||| || || ||||| | || || || || || || Sbjct 1169 AGCCACCAAGGATGGCTACATCACTGTGGCCTTCGGTCTCAGAGTGAGAACACCTCTTCT 1110 Query 31540 CAAGCAAGTGATCCGTAAGACAAGTAAGACACCATATGAGGCAGAAGCAGAAGGTCGTAC 31599 |||||| | ||| || || |||| || || ||||| | |||||| ||| | || Sbjct 1109 GAAGCAAACGGTCCTCAACACGGGTAAAACCCCCAGAGAGGCCGCAGCAGAGGGTAGAAC 1050 Query 31600 AGCAGGTAATGCACTGGGCCAGAGTTGGTGTTTACTCAACTCTCGTGCAAGTGTCGAGTT 31659 ||||||||| ||| |||| ||| | || | | ||| ||||| | || || Sbjct 1049 AGCAGGTAACGCAATGGGTCAGTCCTATTGCATGTTGAACAACCGTGCTGCTTCTGAATT 990 Query 31660 TATGGAGAAGGTTAGATCCAGT--AAACACAGGCTTGATATCCGACCATGTGCTCACATT 31717 |||| |||||| || ||| || | | || || ||| ||||||||||||||| Sbjct 989 CATGGGTAAGGTTCGA--AAGTCGAAGTATCGACTGGACATCAAACCATGTGCTCACATC 932 Query 31718 CATGATGCTCAGTACATGATGGTCAGAGATGA------TATCGATGCCTTGCTCTATGCC 31771 || || ||||| ||| | ||| | || || ||| || | || | || Sbjct 931 CACGACGCTCAATACTACCTTGTCCGTGACGAGGGTTCTATGGAACCTCTGATGTACATG 872 Query 31772 AATGAGCATTTAGTGGAAGCTGTTAAGTGGCAGGAGCATCCTGACATTGCCCACGACGAT 31831 ||||||||| || |||| ||| |||||||| | || || ||| |||||| | Sbjct 871 AATGAGCATCTACCCAAAGCCGTTGCATGGCAGGATGACCCAGAGATTTACCACGATCAG 812 Query 31832 GTGAAACTGGGAGGTGAGTTCGGTATCTTCTATCCAGACTGGGGCCATG 31880 |||||||| |||| | ||| ||||||| ||| ||||| ||||| Sbjct 811 GTGAAACTCTCAGGTTCGGTCGAGATCTTCTGGCCAAACTGGAACCATG 763 >seq76541 Length=11138 Score = 194 bits (214), Expect = 8e-45 Identities = 299/424 (71%), Gaps = 2/424 (0%) Strand=Plus/Minus Query 30088 GATTTATCACAATAT-TGCTTATGACGTTTACGTGTTGATTTATCAACTCTTTATGGATG 30146 ||| |||||||| || |||| |||||||||| ||| |||||||||| | ||||||||| Sbjct 714 GATCTATCACAACATCTGCT-ATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATC 656 Query 30147 ACCTTCTGGACACATCCGGCCTACTTACAGGCTTAGATGTGATGCTCAGAAACTGGGATG 30206 || | || ||| | || | || ||| | || || | || | |||||||| Sbjct 655 ACATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAAT 596 Query 30207 ATACAAAGCTGATCACTTATCTGGCGACGAATTCGTGTGCCGGAAACAAGTTAGGCTTGA 30266 |||| |||| ||||| |||||||| || ||||| ||||| || ||| |||| || ||| Sbjct 595 GTACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGA 536 Query 30267 AAGACCAATCACAGGAATTTGCGGGTAACTATGCTGAGGAAGGTATCAAGGATATCTGTA 30326 | | || | ||||| || || || |||||||||| |||| ||| | || ||| Sbjct 535 AGGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGC 476 Query 30327 ATATCCCTCTGGATCAGCTGCTGCAATATAACCTCGTCGATGGTCTGTCAACGTGGTATG 30386 | ||||||||| |||| || |||| |||||||| ||||| || || || ||||||| Sbjct 475 AGATCCCTCTGCCAAAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATG 416 Query 30387 TGCATAACAAACACTGGGATACGATGGTTGCTGACCAGCAGGAGCATATCTATGCCACCC 30446 | | || ||||| |||||||| || ||| | ||||| | ||||| | | Sbjct 415 TCTACAATAAACATCATTCCACGATGGTCGCAGACGATCAGGAATACATCTACGTTGAGC 356 Query 30447 TGTTCCAGCCAGCAACCAAAGACATCATTCAAATGCAGCTCACTGGTATGCCACTGAACA 30506 ||||| | || | |||||||||||||||||| | || |||||||| | |||| Sbjct 355 TGTTCAAAAAGGCTGTGATCGACATCATTCAAATGCAGTTGACGGGTATGCCCATCAACA 296 Query 30507 TGAA 30510 |||| Sbjct 295 TGAA 292 >seq121188 Length=15723 Score = 192 bits (212), Expect = 3e-44 Identities = 820/1275 (64%), Gaps = 36/1275 (3%) Strand=Plus/Plus Query 71969 GGGAAGTAGATTTTTCCTGCCTTGAACCAAGGAACAACAATATTAAATCGTGTCAATTTA 72028 ||||| | ||| ||||| ||||| || ||||||||| | |||||||| ||| |||| Sbjct 385 GGGAACTTGATCTTTCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTA 444 Query 72029 TCGGTGACTGGACGGATGCCCGGCTCACCAGATTTGGACGATGAAGCAAAGTTGAACCAG 72088 || || | || ||||| ||||| | ||| | | || |||| |||||| | Sbjct 445 TCTGTCATGGGTCGGATACCCGGTTTACCCTTCT-----GCTGG-GCAAGGTTGAAGTAA 498 Query 72089 ACATTCCTGATCATC-ATCTCACGCTGAAGCCATTGTATAAACGCATTTTGTTGTCCGGT 72147 | | ||| | | ||| || |||||| | |||||| |||||| || || || || || Sbjct 499 ATACTCCGG-TAATCCATTTCACGCATGATCCATTGGATAAACCCACCCTGCTGACCAGT 557 Query 72148 GACTTCGATACCGACAGCT-TGTGGTTTGTACTGCTGGCACAGTCTGAACAGGTCATTAA 72206 | || | |||||| ||| ||||| ||||||| || || | |||| || | | Sbjct 558 AATCTCAACACCGAC-GCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGA 616 Query 72207 TATTCTTGTCCATAGTCTGGCGTTTAACAATGCCATCGACCAAGAACCAGTCACCATTGG 72266 | | ||||| ||||| || | || || || ||| || ||| || ||||| | Sbjct 617 TTGAGGTATCCATTGTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCG 676 Query 72267 AGTTAAAGCCCCACACAAAGATAACCGAGTAGTCGGCTGTCTGTTTGGCTGAGGTGGCAA 72326 ||| | | |||| || | || || || || || || ||||| | || ||||||| Sbjct 677 AGTCATACGCCCATACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAA 736 Query 72327 AGTCAGTGGTGATATAGAAGTTGAATGTCTGCTGATTCTCGATTAACAGTGACCGGTCAT 72386 ||||||||||||| ||||| || | || || ||| | | | || ||| | Sbjct 737 AGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAAGGATGTGTTTCCGTTGGA 796 Query 72387 ACCAACGCATATCCGAATCCTGAACCAGACGTTCTTCTTCAGAGGTAATGCGCAGCATCA 72446 |||||| || || |||||||||| ||| || ||| ||| || ||||| | Sbjct 797 ACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCATCCTGAATCCGAAGCATAA 856 Query 72447 GCTCTTGCATGAA-GCCAGATACCTTACCTGTCTTGACTGCC-ATTTCCCACTGAGCTTC 72504 |||| || ||| | | | | |||||| | ||| || | || | | ||| Sbjct 857 GCTCCTGACGGAACGACTCA-AGTTTACCT-TGTTGCTTGAAGAAGTCGTAATCCTCTTT 914 Query 72505 GATGTACTCATAAGGGAAACGGTCTTCCCATGCACCGACAAACTC-TTCACGGCTACAAG 72563 | | || || | ||||| ||| |||||| || || ||| | ||| | Sbjct 915 CAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACAGG 974 Query 72564 GCCAGCGTTCACAAACAGGCCACACGTTCACATCCCATGCACCTGACTCAACGGCTTCAA 72623 | || ||| || ||||| |||||||| ||||||||||| ||||| | |||| | Sbjct 975 AAACTCCTT-ACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTTGAT 1033 Query 72624 TAAGAATGTCGTCTTTGTTAAATGGCGTACCATTGAAGATTACCTTTCTCTTCGTTGGAT 72683 | ||||||| |||| || || || ||||| | || |||| ||| ||| | Sbjct 1034 ACACGATGTCGTTCTTGTCGAAGGGAGTCCCATTCAGAATAGTCTTTGACTTTTGTGGGT 1093 Query 72684 CCATTGCGTGGTTCACACCTTTATATACGGTGTCCTTAATGGCTTC--CATTGAGACACG 72741 | ||||||| | ||| || || || || || ||||| |||| ||| | | Sbjct 1094 GAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT--CTTCGCCATCGCAGTTGG 1151 Query 72742 GGATTTGGAGTCATCATCTGATACCAAGTCATCCAGCACACAGAGCACAGGACGCTTACC 72801 || || | || |||||||| | ||||||||| || || ||| ||| || ||||| Sbjct 1152 AGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGCGAAGGTCGTTTACC 1211 Query 72802 AAAAATCTTCGTACCACGAAGACCTGTCTTGGCACCGAACATCTTGATACCCAGTCTGTG 72861 ||| |||||||||||||| | ||| | ||||||||||||||| || ||| | | Sbjct 1212 AAAGATCTTCGTACCACGGATACCAGACTTGGCACCGAACATACGGACACCAA---ACTT 1268 Query 72862 GTTTCCTTTA--TTGGCAAACTCAATGTAGTTGTCAGTG------AACTTGGCAACCGGG 72913 || | || ||| ||||| |||||||| || ||| | | || | || Sbjct 1269 ATTCCNNCTACGTTG---AACTCCATGTAGTTCTCTGTGATCCGAACCCCAGCTTCTGGC 1325 Query 72914 AGCCACTCCTGAAGAAACTCAGAACTGTTGTATCGGAACTCAATGTTCTTTCTTGCAGAC 72973 | ||| | ||| |||||||| ||| || || || | || || | || ||| Sbjct 1326 ATCCAGTGCTGGAGAAACTCCGAAGAGTCATAACGAGATCGGATCGACTCACGAGCGGAC 1385 Query 72974 TTAACGCCGTTATCCATTGAGTCTGAAACATAGATCATTC-CAGTAATGTCACCGAAGTT 73032 || || || || ||||| ||||| |||| ||| | ||| | | | | || || || Sbjct 1386 TTCACACCATTGTCCATGGAGTCCGAAATATACAACATGCTTTGGACTTTC-CCAAAACC 1444 Query 73033 TGGAAGTCCACCGAACATAGCAATGAATGGTGCAAAGTATTCCATAAACAAAGTTGTCTT 73092 ||||| | |||||| || | | | | |||||| | |||||||| || || Sbjct 1445 GGGAAGATGATTGAACATCGCCAGATACAACGTCATGTATTCAAAGAACAAAGTGGTTTT 1504 Query 73093 TGCTGCACCACGAAAACAGAGATTGGCAATATACTCACTACCACTAATCACTTTGTCTAA 73152 || | |||||| ||||| ||||||| ||| | | | | |||||||||| || Sbjct 1505 CGCAGAACCACGGAAACACAGATTGGTAATCCGTTTCTTGCTGTTCGTCACTTTGTCCAA 1564 Query 73153 CATGGCAAGGTGTACAGGTGGAGTAACGTTAGACTCTCCTGTTCCACCATTGACCAGTTT 73212 |||||||||||| | | ||||| || ||| ||| | || |||| ||||| || Sbjct 1565 CATGGCAAGGTGCATGGAAGGAGTTTTGTGCTCCTCCCCTTTACCGTCATTCACCAGCTT 1624 Query 73213 AATAAAGTTCATGAA 73227 || ||||||||||| Sbjct 1625 GATGAAGTTCATGAA 1639 >seq266624 Length=731 Score = 161 bits (178), Expect = 5e-35 Identities = 337/497 (68%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 63561 TTCCAGTTGCTTCATCTGTT-CTGCCATTGGATCAGGCTGAGGTTTCCATGTGGCTAATT 63619 ||| ||||||| ||| | | ||| || |||||||| || |||| | | | |||| Sbjct 73 TTCAAGTTGCTGCATTTCCTGCTGGAAT-GGATCAGGTTGTGGTTGGTACGAA-CGAATT 130 Query 63620 TATG-AGCCAACTCAGGCATACGTTTTAATTCAGCAATCTCAGACAGAATCATCATGCTA 63678 | | |||||||||||||||||| || | |||||||||| | ||||| ||| | | Sbjct 131 TGTTCAGCCAACTCAGGCATACGCTTGAGGTCAGCAATCTTACCCAGAACGATCTGACGA 190 Query 63679 ATTGCCGGATCCATACCGGGGCCAATAGTTTGCAGCATGAAGCCCAGATCTTTAGCTTTC 63738 | |||||||||| | || |||| ||| || || | | || ||||| || |||||| Sbjct 191 AGCATCGGATCCATATCAGGACCAACAGTCTGAAGAACCATACCAAGATCATTGGCTTTC 250 Query 63739 TGGTCATCGACTTCAGCAGTGGCAATATCCACTTCTAAATCGAAATTACCCTTCAGATCT 63798 || ||||| ||| || |||| ||||| || | | || || ||||| || || Sbjct 251 TGTTCATCAACTGAGGCTGTGGAGATATCAACCTTCAGGTCAAAGTTACCAGCCAACTCA 310 Query 63799 TCACGATTTACGGTAATAAACGTGCTATTTGTGACCCGTACCACCTCTTTTTCAGAGAGG 63858 |||| | || |||| ||||| | || || || || | || | | Sbjct 311 GAACGAGAGATTTCAACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTCCAAG 370 Query 63859 AATACGGCATTCATAGCGATGATTTTATTCCCGATATCGGTCATACCCTTGGCTAAACGG 63918 || |||||||| |||||||| || | ||||| | |||||| ||||| | ||| Sbjct 371 AACTGAGCATTCATTGCGATGATCTTCTCACCGATCTTCTGCATACCTTTGGCCAGACGA 430 Query 63919 CGTAAAATAGCCATTTCACGCTTACTTGCAGCGTCCAAAGTGCCACGAATACCAGCAGCC 63978 || | ||| ||| || || | || || ||||| || || || ||||||| || Sbjct 431 CGAACAATGCTCATCTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAGTTGCA 490 Query 63979 ACATCACCATAAGCATTACCAGAGATGCCACCAGCAAATGACTTAACACCTGTCAGTGCT 64038 || |||||| |||| |||||| || ||||| | ||||| || || || || |||||| Sbjct 491 ACGGAACCATACGCATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAAGTGCT 550 Query 64039 TCTGCTTCTTGGTTCTG 64055 ||||||||||||||||| Sbjct 551 TCTGCTTCTTGGTTCTG 567 >seq282581 Length=1216 Score = 82.4 bits (90), Expect = 4e-11 Identities = 228/344 (66%), Gaps = 12/344 (3%) Strand=Plus/Minus Query 35563 CCATTCACATTCGACTCAGGTACTGCACCTGCTGTTAAGCAGCTCAGAACCAAACTGCTG 35622 || |||| ||||||||||| || | |||||||| |||||||| || ||| || ||| Sbjct 704 CCGTTCATCTTCGACTCAGGAACCGGGCCTGCTGTGAAGCAGCTTCGATACAAGCTCCTG 645 Query 35623 ATCTCAGACATTGGTGCTATCAATCTTCAGATCGATGAGATTGGTTCCAATCTGGTGAA- 35681 | | | | |||| | ||||| | ||||| |||||||| |||||||| || | || Sbjct 644 TTGGCCAAGAATGGTTCGATCAACTTCCAGATGGATGAGATCGGTTCCAACCT--TCAAG 587 Query 35682 -CAACATCGAAGTTCTGACGTTGTACCTTGAGCTTTATGATCAGGGTATCGTTAAGCAGA 35740 ||||| ||||| || | || ||||| || |||| |||| | || | Sbjct 586 GCAACACTGAAGTGCTCAACACACTTCTGGAGCTATACGATCTTGGTAAAATCAAAGCCA 527 Query 35741 AGCTCACCAAAAATACGGCTGAGAGTTCTCGTGCCGAAGAGATGGACGGTAAGACACCTG 35800 ||||| |||||||| | || | | || | || || | ||| ||||||| Sbjct 526 AGCTCGTAAAAAATACCCCGGACAATGAACGGGGTATGGACATCGTGGGTTCGACACCTT 467 Query 35801 CCAACATGTTGCTGTTTGGTACTCCTGC-CAAATTGCTCGATGGTGGTGCT---GTGGAA 35856 | ||| | ||| |||| || | || || |||| |||| || |||||| | || Sbjct 466 CGAACGTATTGATGTTCGG--CACCAGCTCAAA--GCTCTTTGACGGTGCTAAAATTGAG 411 Query 35857 GACCAGTTCTATTCTTTCCTCGACACGGGTTATGCTCGTCGTTG 35900 || |||| || || ||| | | |||||||||||||| || || Sbjct 410 GAGGAGTTTTACTCCTTCTTGGCGACGGGTTATGCTCGACGCTG 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239500182549408