Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq287714 82.4 8e-11 >seq287714 Length=1605 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 142329 GCATATGATGCAATATTAAATGGAAGACCGAGGAAAACATCTACCGAACGTTGATACCAC 142388 ||||| || ||||||||||| || | ||| | ||| | ||| | |||||||| || Sbjct 1246 GCATAAGAGGCAATATTAAACGGCACACCTAAGAAGATATCCGCAGAACGTTGGTAAAGT 1187 Query 142389 TGA-AGGTCAAGGTATCCATTACGCACATTAAACTGATAGAACATATGACAAGGCGGTAA 142447 ||| | | ||| | ||||| ||||| ||||||| | | | ||||||||||||| || Sbjct 1186 TGACAAGACAACTT-TCCATCCGCCACATAAAACTGAAACATCGTATGACAAGGCGGCAA 1128 Query 142448 TGCCATATATTTAAGTTCAGCTGGATTCCACGCAGAAACAATTTGACGCCTATCATTTGG 142507 ||||||| | || |||||| ||||| || |||||| || || | |||||| Sbjct 1127 GGCCATATCATCAACCAAAGCTGGGTTCCAAGCGCTAACAATATGTCGGCGCGAATTTGG 1068 Query 142508 CAGTTTTTTAATACGATCAATAACTTCTATAATTTGATC 142546 || ||||| | | || || || | |||||||| Sbjct 1067 ATTTTCTTTAAGGCTCTTAACAAGACCTTTTATTTGATC 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531177532243840