Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031104.1 Length=72979 Score E Sequences producing significant alignments: (Bits) Value seq121188 114 6e-21 >seq121188 Length=15723 Score = 114 bits (126), Expect = 6e-21 Identities = 350/532 (66%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 68113 TTCGCAGAGGTAGCGAAGTCAGTAGTGACGTAGAAGTTGTACCGCTTCTTGTTGTCCAGC 68172 |||| || || || |||||||| |||| |||||| || || ||||||||| | || Sbjct 721 TTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAAGG 780 Query 68173 ACGTTGCGACGCATGTACCAAGCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGAC 68232 | || || | ||||| | | ||||| ||||| | | ||| || || | Sbjct 781 ATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCATCC 840 Query 68233 ATGATCTGGAGCATAAGCTCTTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCCAGG 68292 ||| | ||||||||||| || ||||| ||| | || ||| | |||| | | Sbjct 841 TGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTGCTTGAAGAAG 900 Query 68293 GTGTACTTCTGCAACACGAAGTCGTAGGTGAATCGGTCAGCCCATGCACCCCTGAACTC- 68351 ||| | || || ||||||||| || || || | |||||| ||| || Sbjct 901 TCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCC 960 Query 68352 TTCCCGCGAACACGGGAATCTC-TCGCACACAGGGTAGACGTTGACCTTCCAGGCACCAG 68410 ||| |||| |||| ||| | ||||| || | ||||| |||| ||| ||||||| Sbjct 961 TTCTTATCAACA--GGAAACTCCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAG 1018 Query 68411 ACTCCACTGCTTTGTACA-GAGGATCCTTCGCGTTGAACGGTGTACCCGACCAG-ATGAT 68468 |||| | ||||| |||| || | || ||| || ||| || || ||| ||| || | Sbjct 1019 ACTCGATTGCTTGATACACGATG-TCGTTCTTGTCGAAGGGAGT-CCCATTCAGAATAGT 1076 Query 68469 CATGTTCTTCTTCGGGTGCAGTGCATAGTCCACTGCCTTGTACACCGTGTCTTCGATGGC 68528 | | ||| | ||||| || || | || | ||||||| || || || | || Sbjct 1077 CTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAATCTT 1136 Query 68529 TGCGATGACGGTTGGCGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAGTACCGCAAG 68588 || || | ||||| || |||||||| || || | ||||||||| || || ||||| Sbjct 1137 CGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAG 1196 Query 68589 CTGCGGTCGCTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACCG 68640 | ||||| ||||| | ||||| |||||||| ||||| |||||||||| Sbjct 1197 CGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCG 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232586985609440