Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq191643 100 4e-16 seq14098 96.9 5e-15 seq287714 89.7 8e-13 >seq191643 Length=905 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 614 GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTC 673 |||| |||| ||| |||||||||||||||||||||||||||||||| | |||||||| || Sbjct 259 GGGGTGTAGCTCAGCTGGTAGAGCGTCGGTCTCCAAAACCGAATGTCGTAGGTTCGATTC 318 Query 674 CTGTCTCCCCTGCCA 688 || || ||||||||| Sbjct 319 CTATCGCCCCTGCCA 333 >seq14098 Length=52687 Score = 96.9 bits (106), Expect = 5e-15 Identities = 203/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 |||||||||||| | |||||| || || ||| ||||| || | ||| | || Sbjct 21732 ATGAAACAATATTTAGACTTATTGGCGCATATTCTAGAAAATGGCACAGAGAAATCAGAT 21791 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 | || ||||| || || ||| || || | || ||||| ||| | ||| |||| Sbjct 21792 AGAACGGGTACAGGTACTAAAAGTGTATTTGGTCATCAAATGCGATTTGATTTAACAGAA 21851 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || ||||| | | || || ||||| |||| | | ||| || || | || || || Sbjct 21852 GGATTTCCTTTATTAACAACTAAAAAACTTCATTTGCATTCTATTATTTACGAACTACTT 21911 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 ||||| | | ||||| || || | | ||| | ||| | || || | || ||| Sbjct 21912 TGGTTTTTGAAAGGTGATACTAATACCGCTTATCTAAAAAAGAATGGGGTTAGTATTTGG 21971 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGC 202090 || |||||||| ||| | || ||||| ||||| ||||| || |||||||||||| | || Sbjct 21972 GATGAATGGGCTGATGATAAGGGTGATTTAGGTCCGGTATATGGTAAGCAATGGAGAAGT 22031 Query 202091 TGG 202093 ||| Sbjct 22032 TGG 22034 >seq287714 Length=1605 Score = 89.7 bits (98), Expect = 8e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 |||||||| || || || || | ||||| || || | |||||||| ||| || || Sbjct 759 GACCGTACGGGCACAGGTACACGTTCTGTCTTTGGGCATCAGATGCGGTTTGACCTAAGT 818 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 |||||||||| | ||| || || || ||||||||||||| || || || ||| Sbjct 819 AAAGGTTTTCCTGTTACCACGACTAAGAAACTTCACCTTCGTTCTATTATTATCGAACTG 878 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 | ||||| | |||| || || | | | ||| | || ||| ||| | || Sbjct 879 TTATGGTTTTTGCGTGGTGGAACGAATGTTAAATGGTTGCAGGATAACGGCGTTTCTATT 938 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||| |||||||| ||| |||||||||| | || || || || || | |||||||| Sbjct 939 TGGGATGAATGGGCAGATGAAAACGGTGATCTTGGTCCTGTTTATGGGTATCAATGGCG 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785160320855360