Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq287714 104 4e-17 seq256083 86.0 1e-11 >seq287714 Length=1605 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 196070 TGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCG 196129 ||||||||| ||||| || || ||| | || ||| |||||||||| |||||||| | Sbjct 758 TGACCGTACGGGCACAGGTACACGTTCTGTCTTTGGGCATCAGATGCGGTTTGACCTAAG 817 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 ||||| || || | ||| || || || | ||||| || ||||| || |||||| Sbjct 818 TAAAGGTTTTCCTGTTACCACGACTAAGAAACTTCACCTTCGTTCTATTATTATCGAACT 877 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 ||| ||||| || || | || || | | | || | || ||| ||| ||| Sbjct 878 GTTATGGTTTTTGCGTGGTGGAACGAATGTTAAATGGTTGCAGGATAACGGCGTTTCTAT 937 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||||| |||||||||||| | || |||||||| || || || || | || ||||| Sbjct 938 TTGGGATGAATGGGCAGATGAAAACGGTGATCTTGGTCCTGTTTATGGGTATCAATGGCG 997 >seq256083 Length=796 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 196099 TTTTCGGGTATCAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAA 196158 |||| || ||||| ||||| |||||| ||| |||| || ||| || | ||||| |||| Sbjct 627 TTTTTGGTTATCAAATGCGCTTTGACTTGCAGGAAGGATTTCCGGTGCTTACCACGAAAA 686 Query 196159 AGTTGCACCTGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACA 196218 || |||| | ||| ||||| || || ||||||||||| | | || || ||||||| Sbjct 687 AGCTGCATTTAAAATCGATCATTCATGAGCTGTTGTGGTTTTTACAAGGTGATACCAACA 746 Query 196219 TCCAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGAT 196268 | ||||| || | || || ||||||||||| ||||| ||| Sbjct 747 TTGCCTATCTCAACAAGCACGGTGTTTCCATCTGGGATGAATGGGCTGAT 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 767528162714560