Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq14098 118 4e-22 seq61270 96.9 1e-15 >seq14098 Length=52687 Score = 118 bits (130), Expect = 4e-22 Identities = 234/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 51901 ATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGG 51960 |||| | ||| | || || || |||||||| |||||||| ||||| || ||| | | | Sbjct 21943 ATCTAAAAAAGAATGGGGTTAGTATTTGGGATGAATGGGCTGATGATAAGGGTGATTTAG 22002 Query 51961 GTCCTGTGTATGGTAAGCAGTGGCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATC 52020 |||| || ||||||||||| ||| | |||||| | | || | || | || || |||| Sbjct 22003 GTCCGGTATATGGTAAGCAATGGAGAAGTTGGCAAGGTGCTAATGGACAAGTGATTGATC 22062 Query 52021 AGATCCATGAAGTCGTCAAATC-AATTAAGAACGATCCTGATAGTCGACGGCACATTGTC 52079 | || | | || || | | | |||||| || || ||| | || | ||||| Sbjct 22063 AAATTTCTCAGGT-GTTAGAGCAAATTAAAAATACCCCAGATTCTAGAAGAATGATTGTT 22121 Query 52080 TCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTC 52139 |||||||| || ||||| || ||||||||||| || ||||||| ||| | | ||| Sbjct 22122 AACGCTTGGAACGTTGGTGAATTAGATGATATGGCTTTATCTCCCTGTCATGCCTTGTTC 22181 Query 52140 CAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATG 52199 ||||| |||||||| | || | | || || || | || || | || || || Sbjct 22182 CAATTTTATGTAGCAAATGGACAATTGTCTTGTCAGCTTTACCAAAGATCCTGTGATGTG 22241 Query 52200 TTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGAC 52243 || || || | || ||||| ||||| |||||| | || |||| Sbjct 22242 TTTTTAGGACTGCCTTTTAATATTGCTAGCTATGCTCTGATGAC 22285 >seq61270 Length=8000 Score = 96.9 bits (106), Expect = 1e-15 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 52082 TGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCA 52141 ||||||||| | | | ||| | || ||||| ||| |||| ||||| || | || Sbjct 7351 TGCTTGGAACGCGAGAGATCTTCATTTAATGGCCTTGCCTCCGTGCCACTGTCTTGTACA 7410 Query 52142 ATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGT- 52200 |||||||| || | || ||||||| ||||| |||||||||| ||||| || ||| Sbjct 7411 GTTCTATGTGGCGAACGGGGAGCTTTCTTGCCAAATGTATCAGCGCTCTGCTGATATGGG 7470 Query 52201 TCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATC-TGATTGC 52255 |||||| || || |||||||||||||||||| || | || || |||| |||| || Sbjct 7471 TCTTGGT-GTACCATTTAACATTGCCAGCTATGCCCTTCTAAC-CATCATGATGGC 7524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189444481127760