Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11950 132 1e-25 seq271769 87.8 4e-12 >seq11950 Length=2906 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || || || |||||||| || || || ||||| ||||||||||||| | ||| | Sbjct 422 AGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGG 363 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| ||||| ||||| || | ||| || || | | |||||||| Sbjct 362 CCATCTTCAAGTTGCTTT--CCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTT 305 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 | || || || || || ||||| |||| | | ||||||| ||| || || || | Sbjct 304 CTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTG 245 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || |||||||| || |||||||| ||||||| |||||| Sbjct 244 TGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 127 bits (140), Expect = 5e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| || |||||||||||||| ||||| || ||||| || || ||||| | | || | Sbjct 651 GAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCG 592 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || ||||| || || ||||| || || | |||||| || | | ||||| || Sbjct 591 ACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTC 532 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||||| |||| | | ||||||| ||| || || || || Sbjct 531 CTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGT 472 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| || |||||||| ||||||| |||||| Sbjct 471 GATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || | ||| | ||| ||||||||||| |||||||| || | || ||| Sbjct 1109 CTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTT 1050 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || || || || |||||||| | | ||||||||| | | |||||| Sbjct 1049 CGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCT 990 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || || ||| | || | | |||| || ||| || |||||| Sbjct 989 TCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGA 930 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || ||||| || || |||| ||||||| Sbjct 929 GTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 116 bits (128), Expect = 9e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || || || || ||||||||||| |||| | || | ||||| Sbjct 1328 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 1269 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | |||||| || | | |||||||| || | Sbjct 1268 TCGAGTTGCTTT--CCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGT 1211 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | |||| || ||| || ||||||||||| | Sbjct 1210 CCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGG 1151 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||| ||||| ||||| ||||| | ||||||| Sbjct 1150 TTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| ||||| ||||| || |||| | || | || || |||| Sbjct 867 CAAG-TGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGACAGGGTGCGACCGTCCTCTA 809 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || || | |||||| || | | ||||| ||||| ||||||| Sbjct 808 GCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAA 749 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | | ||||||| ||| ||||||||||| || || || | Sbjct 748 TCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGATGGTCTTTC 689 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| || || | |||||| Sbjct 688 CAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || |||||||||||||| || || || || || || ||||| |||| | ||| | Sbjct 194 AGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTACGA 135 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || |||||||| | ||||||||| | | |||||||||| Sbjct 134 CCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCC 75 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || |||||| |||| | | || || ||| || || ||||| Sbjct 74 TTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCGACCTCGAGAGTG 15 Query 152067 ATAGTTTTGCCCGT 152080 || || || || || Sbjct 14 ATGGTCTTTCCAGT 1 >seq271769 Length=1390 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | ||||| || || || || |||||||| Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | |||||| || | | ||||||||||| || || || || || || |||| Sbjct 788 AAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCTCG 729 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | | || || ||| || ||||| || || || ||||||||||| ||||| |||||| Sbjct 728 ATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 669 Query 152097 ACCTGCAT 152104 | ||||| Sbjct 668 ATTTGCAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149554094717336