Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11950 158 3e-33 seq147988 149 1e-30 seq78081 149 1e-30 seq271769 123 5e-23 seq241702 89.7 1e-12 >seq11950 Length=2906 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 ||||| | || ||||| || | ||| || ||| |||||||| ||||||||||| | | Sbjct 1115 CCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGAC 1056 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| ||||| || || || ||||||||||| || ||||| || Sbjct 1055 AAG-GTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 997 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| | || || | || || ||||| || | || || Sbjct 996 AATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAAC 937 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||| ||||| || || | ||| ||||| || ||||||||| Sbjct 936 CTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | ||| ||| || |||||||||||||| | Sbjct 1343 CCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 1284 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 1283 AGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 1224 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| | || || | || |||||||| || | || || Sbjct 1223 ATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACC 1164 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || || || || | ||||| ||||| ||||||||| Sbjct 1163 TCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || | ||| || ||||| | ||| ||| ||||| |||||||| || | Sbjct 431 CCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAG 372 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || |||||||| || ||||| || ||||||||||| | ||| ||||| || || Sbjct 371 AGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGG 312 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || |||||||| || || ||| | || || ||||| || || || || Sbjct 311 ATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACC 252 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| || || || || | |||||| ||||| || |||||| Sbjct 251 TCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || | ||| || ||||| | || ||| ||||| || || || |||| Sbjct 659 CCACCTCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGAC 600 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || |||||||| || || || || || || | ||| || || || ||| Sbjct 599 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 540 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| || || ||| | || || ||||| || || || || Sbjct 539 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACC 480 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| || || || || | |||||| ||||| || |||||| Sbjct 479 TCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||||| ||||| | || ||||| || |||||||| || || || || || Sbjct 851 TCCTTTTGAATGTTATAGTCGGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 792 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || || ||||| |||||||||||||| ||||| || || ||| | Sbjct 791 ATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTC 732 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || || || ||||| |||||||| ||||| || || | ||||| || Sbjct 731 TCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACA 672 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 671 AAAATTTGCATT 660 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || | ||| || ||||| | || ||| || || || |||||||| | | Sbjct 203 CCACCTCGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAA 144 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| || |||||||| | ||| || ||||| || Sbjct 143 AGAGTACGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGG 84 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || || || || || | ||||| Sbjct 83 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCGACC 24 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||||||||| ||||| || || Sbjct 23 TCGAGAGTGATGGTCTTTCCAGT 1 >seq147988 Length=4520 Score = 149 bits (164), Expect = 1e-30 Identities = 241/344 (70%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 || || || || || |||||||| ||||||||||||||| ||||||| | |||| ||| Sbjct 2226 CAGGCATCTACTTCAGAGTTGTATGGAAAGGTTCAGGAGGTTCCTCAGAAGGAAACGACG 2167 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGT-AA 44102 || |||||||| || ||||| ||||| ||||| ||||| |||||||| ||| | || | Sbjct 2166 CCTTTTTATCCTCGTAGTCCCTATGGCGTGGCCAAGCTCTATGCCTACTGG-TCCGTGAT 2108 Query 44103 AAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAG 44162 || | || ||| | |||| ||||| | |||||| ||| || || || || || Sbjct 2107 TAACTTCCGGGAGGCCTATGATATGTTTGCCTGTAATGGGATCCTCTTTAACCATGAGAG 2048 Query 44163 TCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTTT 44222 ||| ||||| | | || || || | || || ||| | ||||| || ||| Sbjct 2047 TCCACGGAGAGGAGAGAACTTTGTCACGAGGAAGATTACGCGCTCTGTTGCCAAGATTCA 1988 Query 44223 CAACGGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATA 44282 ||| | | ||| | | || |||||| | ||||| || | ||||||||| | Sbjct 1987 GTTGGGGCTCCTAGATTGCTTTGAACTTGGAAACTTGGACTCCAAGCGTGATTGGGGACA 1928 Query 44283 TGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAG 44326 |||| ||| |||||| ||| |||||||| |||||||| |||| Sbjct 1927 TGCCAAGGACTATGTACAAGGAATGTGGCTCATGTTGCAGCAAG 1884 >seq78081 Length=4256 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 ||||||| ||||||||||| | ||| || || |||||||| || || || |||||||||| Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||||||| ||||| || || || |||||||| |||||||| || | || || | | Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTT 3094 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| || || || | || || ||||| || || || |||||||| | |||||||||| Sbjct 3095 CGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGA 3154 Query 283090 ATATCTGCAT 283099 | |||||||| Sbjct 3155 AAATCTGCAT 3164 >seq271769 Length=1390 Score = 123 bits (136), Expect = 5e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || || |||||||| || || || || || |||||| Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||| || || || ||||| || ||||| || |||||||| | || ||| | ||| Sbjct 788 AAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCTCG 729 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || || || || | || || || || ||||| ||||| ||||| | ||||| ||||| Sbjct 728 ATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 669 Query 283092 ATCTGCAT 283099 || ||||| Sbjct 668 ATTTGCAT 661 >seq241702 Length=1087 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 301425 TAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGA 301484 |||| | ||||| ||| | || || ||||||||||||||| || ||| ||||| || Sbjct 869 TAAATTAGACCCTTATTTGAATGTTGATCCGGGGACGATGTCTCCCTATCAGCATGGCGA 928 Query 301485 AGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTT 301543 | || |||||||| |||||||| |||||||| || || || || ||||| || |||| Sbjct 929 ATGCTTTGTGACGGACGATGGTGCGGAAACCGACCTCGACCTTGGTCACTATGAGCGTT 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1042868470962864