Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq28030 116 4e-21 >seq28030 Length=5412 Score = 116 bits (128), Expect = 4e-21 Identities = 243/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 23524 TGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCT 23583 || || ||||| || | | ||| | ||| ||||| || || | || ||||| | ||| Sbjct 1556 TGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCATGAGTCCA 1615 Query 23584 CGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCC 23643 || || || | ||| || || | |||||| || ||||| |||||||| || || || ||| Sbjct 1616 CGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTTCCACGGCC 1675 Query 23644 GCAAAGGCCACAAGACGTGTACCAAATGTTGCAT---TATAATCAGAAATCCAttttttt 23700 ||||| || | | || ||||| | ||| || | | | |||| |||| Sbjct 1676 GCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCG---TCCACTTTTGA 1732 Query 23701 GTCCAATTAGCCTTCAATTTTACA-CACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGT 23759 | |||| ||||||| || | | || || | | || | || || ||||| | Sbjct 1733 GCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGT-TGTCCAGGGCGTTAAAGAGGCGACC 1791 Query 23760 TTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAAT 23819 ||||| || ||||| | ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 1792 CTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTACATTTCAGAGTGAAT 1851 Query 23820 ATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCA 23877 ||||| || || | |||||| ||||| || |||| ||||||| | ||| || ||| Sbjct 1852 GTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTGGACCTCA 1909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519606627742400