Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq271769 149 4e-31 seq11950 132 3e-26 seq78081 109 4e-19 >seq271769 Length=1390 Score = 149 bits (164), Expect = 4e-31 Identities = 149/191 (78%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| || || |||| Sbjct 850 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGA 791 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||||||||||||||||| || | |||||||| ||| ||||| ||||| |||| Sbjct 790 TCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCAC-GTTC 732 Query 44268 -CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| |||| || |||||||| | || || ||||| |||||||||||||| ||| Sbjct 731 TCGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 672 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 671 AAGATTTGCAT 661 >seq11950 Length=2906 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||||| ||||| |||| |||||| || ||||||||| ||||| || || Sbjct 891 CATTCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTC 832 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| || |||||||| || || || || | |||||||||||||| Sbjct 831 GGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGG 772 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| || | | |||| | |||||||| | || | Sbjct 771 GGGAATTCCCTCCTTGTCTTGAATCTT-AGCCTTGACGTTCTCAATGGTGTCTGAGGCCT 713 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || |||||||| || |||||||| || || |||||||| Sbjct 712 CAACTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCAT 661 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 |||||| | || | || |||| |||||| ||| ||||| ||||||||||| |||| Sbjct 1344 TCCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 1285 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| ||| | || || || ||||| ||||| |||||||||||||||||||||| || Sbjct 1284 GAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 1225 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||||| || ||| ||||| ||| | || | || ||||| | | || || Sbjct 1224 AATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAAC 1165 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | ||||| || || || ||||||||||| ||||| || ||||| Sbjct 1164 CTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1117 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || || | || || ||||| ||| |||||||| |||||||| Sbjct 438 TTGCATTCCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTA 379 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| ||| || | || || || ||||| ||||||||||| | |||||| ||||| Sbjct 378 ATCGGAGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATC 319 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | ||||| || ||| ||||| ||| | |||| | |||||||| | || Sbjct 318 TGGGGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGAC-GTTCTCAATGGTGTCTGAGG 260 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || || || || || || ||||| |||||||||||||| Sbjct 259 CCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 205 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || || | || || ||||| || |||||||| || || || Sbjct 666 TTGCATTCCACCTCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATA 607 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || ||| |||| || |||||||| || || || || | |||||||||||| Sbjct 606 ATCAGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATC 547 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | || ||||| || ||||| ||| | |||| | |||||||| | || Sbjct 546 TGGGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTGAC-GTTCTCAATGGTGTCTGAGG 488 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || || || || || || ||||| |||||||||||||| Sbjct 487 CCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 433 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | || | || | ||| ||| ||||| |||||||| || Sbjct 1119 CATTCCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTC 1060 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || || || ||||| || || ||||||||||||||||| |||| Sbjct 1059 CGACAAGGTTCGGC-CATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTG 1001 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| ||||| || | |||||||||| | | Sbjct 1000 GGGGAATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCT 941 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || || || || || ||||| ||||| Sbjct 940 CAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCAT 889 >seq78081 Length=4256 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||| |||||||| || | || || | || || |||||||| |||||||||||| Sbjct 2977 TTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGATC 3036 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 |||||||| ||||||| ||| | || ||||| || || || ||| | || | Sbjct 3037 AAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTTCG 3096 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 ||||| || | || || ||||| | ||||| || || |||||||||||||| ||||| Sbjct 3097 ATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAA 3156 Query 44330 ATTTGCAT 44337 || ||||| Sbjct 3157 ATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358724131068072