Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11950 176 1e-38 seq271769 140 8e-28 seq78081 134 3e-26 >seq11950 Length=2906 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || ||||| ||||| || ||||| || ||||||| Sbjct 208 CAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCAGAC 267 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| ||||| |||||||||||||| || || || || Sbjct 268 ACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCAACAG 327 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| || || |||||||| | ||||| ||||||| ||| | Sbjct 328 CGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAACATT 387 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || || ||||| ||| | || || Sbjct 388 CAAAAGGAATCCACCCTTCATCTCGTTCTTAGGCT 422 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || ||||| ||||| || ||||| || ||||||| Sbjct 436 CAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCAGAC 495 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||| ||||| || ||||| || || || ||||| Sbjct 496 ACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAGCAG 555 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || || || | || || | |||||||| | Sbjct 556 CGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATAATATT 615 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || |||||||| | || ||| || Sbjct 616 CAAAAGGAATCTACCCTTCATCTTGTCCTTAGGCTCCGA 654 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||| |||||||| || || || || || ||||| ||||| Sbjct 1 ACTGGAAAGACCATCACTCTCGAGGTCGAGCCATCTGATACGATTGAGAATGTCAAGGCC 60 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||| Sbjct 61 AAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAA 120 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || |||||||| | |||||| |||| || || | || || ||||| || || ||| Sbjct 121 CAACTGGAAGATGGTCGTACTCTTTCCGACTACAATATTCAGAAGGAATCGACCCTTCAT 180 Query 178125 CTTGT 178129 ||||| Sbjct 181 CTTGT 185 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || ||||| || ||||| || || || || ||||||| Sbjct 664 CAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCAGAC 723 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||| ||||| || ||||| || || || ||||| Sbjct 724 ACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAGCAG 783 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || || || | || || |||| |||||| | Sbjct 784 CGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAACATT 843 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || || | ||| ||||| | ||| Sbjct 844 CAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGA 882 Score = 136 bits (150), Expect = 9e-27 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || ||||| || || || ||||| || || ||| Sbjct 1120 CAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAGCCATCTGAC 1179 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||||||||||||||| || || || ||||| Sbjct 1180 ACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAG 1239 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || ||||| ||||| | || || |||| || ||| || Sbjct 1240 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACAACATC 1299 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 1300 CAGAAGGAATCCACCCTTCA-CTTG 1323 >seq271769 Length=1390 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||| |||||||| ||| || Sbjct 664 CAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGCCCTCCGAT 723 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 724 ACCATCGAGAACGTGAAGACCAAGATCCAGGATAAGGAAGGAATTCCCCCAGATCAGCAG 783 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| || |||||| |||| || |||| || ||| || Sbjct 784 CGTTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTCTCCGACTACAACATC 843 Query 178104 CAAAA 178108 || || Sbjct 844 CAGAA 848 >seq78081 Length=4256 Score = 134 bits (148), Expect = 3e-26 Identities = 144/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || ||||| || ||||||||||| || ||| || Sbjct 3161 CAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCTGAT 3102 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| || || || || ||| || || || || || ||||||||||| || || || Sbjct 3101 ACCATCGAAAATGTTAAGACCAAA-ATCCAAGATAAGGAGGGAATCCCTCCAGATCAACA 3043 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | ||||| |||||||| |||||||| |||||| | || ||| | || || ||| | Sbjct 3042 GCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGACTACAACAT 2983 Query 178103 CCAAAAAG 178110 ||||||| Sbjct 2982 TCAAAAAG 2975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199279931423504