Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq91934 132 5e-26 >seq91934 Length=4437 Score = 132 bits (146), Expect = 5e-26 Identities = 393/601 (65%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| ||||||||||| ||||||| |||| |||| || ||||| || || | | || Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 || | |||||| || || || ||| || || || |||||| | || || | Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGT 3446 Query 16918 AACTCGTTC----CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG-ACATGCGAAA 16972 | || || || ||||| ||||| ||| |||||||||||| | ||| || ||| Sbjct 3445 TATTCTCTCACGGCTGGGACGTTGTAT---TAA-ATGTTTAAACATTAACACA-GCAAAA 3391 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 || |||||||| |||||||| | || | || || || ||||| | || ||||| Sbjct 3390 TCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATA 3331 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || |||||||||| ||||||||||| || || ||| ||||| || ||||| Sbjct 3330 AGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTCC 3271 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | ||||| || || | ||||| | | | || ||| | |||||| | Sbjct 3270 ACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCAATCCAAGAC 3211 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 |||| ||||| || |||| | ||||||||| ||||| ||||| | | Sbjct 3210 ATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAA 3151 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 || || | | || | || || | ||||| | | || |||||||| |||||| Sbjct 3150 TCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGT 3091 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | || |||||||| || || || || || || || || || || | | ||| || || Sbjct 3090 ACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCT 3031 Query 17333 ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392 | | || ||||| | |||||||| || || || || ||| || || || || ||| Sbjct 3030 TGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCC 2971 Query 17393 A 17393 | Sbjct 2970 A 2970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516267844606800