Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq91934 168 7e-37 >seq91934 Length=4437 Score = 168 bits (186), Expect = 7e-37 Identities = 414/617 (67%), Gaps = 23/617 (4%) Strand=Plus/Minus Query 16026 TAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA 16085 |||| || | ||| ||||||||||| ||||||| |||| || | ||||| || || | Sbjct 3574 TAACAAA-CGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAA 3516 Query 16086 T-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTA 16144 | || | | || || | ||||| ||||| || | |||||| || || ||||| | Sbjct 3515 TCAAATTG-ACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTT 3457 Query 16145 ATGATATCGGTGG----CTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAG 16200 || || ||||| ||| | | |||| ||||| || ||||||||||||| Sbjct 3456 ATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTAT----TAAATGTTTAAACATTA- 3402 Query 16201 ACAC-GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 |||| || || || ||||||| || ||||| | || | || ||||| || || | Sbjct 3401 ACACAGCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAA 3342 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAA 16317 || ||||| || |||||||||| ||| ||||||| |||||| || | | | || Sbjct 3341 GGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTG--AA 3284 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || ||||| |||| ||||| || || | ||||| | | | || ||| Sbjct 3283 GAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGA 3224 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | | |||| ||||| || | || | | ||||||||| ||||| Sbjct 3223 GCCAATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGC 3164 Query 16438 CTTAAACAATTTCTC---TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 ||||| | | || || ||| | ||| | || || | || |||| | ||| Sbjct 3163 ATTAAAGAGATAATCGCGTTGTTCGCG---ATCTTTAATGTAGCTGTCGATCAAAATACT 3107 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||||||| ||||||| || || ||||| || || || |||||||| || || ||||| Sbjct 3106 ATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTC 3047 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | |||||| || | |||| ||||| | || || ||||| || ||||| || Sbjct 3046 TGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGA 2987 Query 16615 TGCAGCAAAAAACGCCA 16631 |||||||| || |||| Sbjct 2986 AGCAGCAAAGAAGGCCA 2970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510151781773200