Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq41982 517 1e-141 seq91934 295 8e-75 >seq41982 Length=5201 Score = 517 bits (572), Expect = 1e-141 Identities = 1493/2277 (66%), Gaps = 28/2277 (1%) Strand=Plus/Minus Query 52797 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 |||| |||| || ||||| || | | | ||| ||||| || | | ||| ||||| | Sbjct 3365 CCTTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGC 3306 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || |||| || |||| | || ||||| || || | ||| || | | Sbjct 3305 CGGTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGG 3246 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | || || | ||| ||||| | || ||||||||||||||||| || || | || || | Sbjct 3245 GTTCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTG 3186 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 53035 |||||| || | ||||| | ||| ||||||| || ||||| | || | |||| Sbjct 3185 CCATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACG-AATA 3127 Query 53036 TCTTCTGGAAGGTT-TGTATTC--TGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092 |||| |||| | | ||| || ||||| || | || ||||| || || || Sbjct 3126 TCTTTGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTC 3067 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || || |||| ||||| | | || |||||| || | || | ||| |||| || | Sbjct 3066 ATTTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATA 3007 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 | |||||||| || | || | | || |||||||| |||||| || || | || Sbjct 3006 TTGAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGAT 2947 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 |||||||| ||||| ||||| || || || ||||| |||||||| |||| | ||| | Sbjct 2946 TCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAA 2887 Query 53273 TTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 53331 |||| | ||| | |||| ||||||| ||||| | | ||| ||||| | ||| | Sbjct 2886 TTTCGTACACCATGCTGTT-TGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGT 2828 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 53391 || |||||| || || ||||| | | || ||| Sbjct 2827 AGGAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATA 2768 Query 53392 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 53451 || || || || ||| ||| || | | ||||||||| || || ||||| || ||||| Sbjct 2767 AGTTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATA 2708 Query 53452 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 ||| |||||||| || | | ||||| || | ||| || | || || Sbjct 2707 AATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGGGGAAACG 2648 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | | ||| || | ||| || | || || ||||| || || ||||| | ||| | Sbjct 2647 CATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAG 2588 Query 53572 ATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 |||||| |||| || || || | ||||||| | ||||| ||||| ||||| ||||| Sbjct 2587 ATTAGA--TTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGA 2530 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCT 53686 ||| || ||| ||||| |||| || | ||| ||| || ||| | | || Sbjct 2529 TTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGC 2470 Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 | |||||||| || | || || || |||| |||||| ||||||| ||||| | | Sbjct 2469 GTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTGCG 2410 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | ||| | || || || || || | ||||| ||||| || || || | |||||| || Sbjct 2409 GAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGG 2350 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 |||||||| ||||| |||||||| || | ||| | || ||||| ||||| | || Sbjct 2349 TTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGA 2290 Query 53867 GATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTTTC 53925 | ||| || || || ||| | | | ||||| | || | |||| | | || Sbjct 2289 GCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGCCTTCA 2230 Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 | |||| || ||||||||| ||| || || | |||||||| | | || ||||| Sbjct 2229 T-TTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGG 2171 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 ||||| | |||||||| |||||||| ||||| | || | |||| ||||||||| | Sbjct 2170 ACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAA 2111 Query 54046 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 54104 ||| || ||||| || || ||| ||||||||||| | ||| || || || || || |||| Sbjct 2110 ATCGGGTATCCACAGGGC-ATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTAT 2052 Query 54105 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCA 54164 | || || | ||| | || | | |||||| |||||||| || ||||| || |||| | Sbjct 2051 TTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAA 1992 Query 54165 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 54224 |||| || |||||| || || ||||||| || | || || ||| | || | Sbjct 1991 ATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCC 1932 Query 54225 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 | | ||| || | | ||||| || | || || || || ||| | | || ||| Sbjct 1931 TAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGG 1872 Query 54285 CACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 | | || | | | || || || || || || || ||| || || | ||||| Sbjct 1871 CCCTTATGCAGTGCACGTTAAT--GCCAATACCACCAGCAGATTTGGAAATCATGGCGCA 1814 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | ||| | | | | || || || ||| |||| ||| |||| | | || || || Sbjct 1813 TTGTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCA 1754 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 |||| ||| | || || | ||| ||| || || || || || || ||||| Sbjct 1753 CGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAA 1694 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | ||||| | | || || || ||||| || || ||||| || | ||| || Sbjct 1693 ATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTAT 1634 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 |||| || || | ||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct 1633 ACCTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTT 1574 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 |||||| |||||| | |||| || || || |||||||| ||||| |||||| || || Sbjct 1573 CAGCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCACGATC 1514 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702 |||||||| || || | || || || | || |||| | || ||||| Sbjct 1513 ATAAATAATGGACGAATTCAAACGTTCTGCATTCTTCTGCACCACAT-TGTAGTGATACT 1455 Query 54703 -TGAAATAATCGGAGAA-TGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTC 54760 ||||| || || ||| | || ||| | | | | || ||||| | | | | ||| | Sbjct 1454 CCGAAATCATGGGCGAAGTTTTACCCGTCTCTTTG-TTAACATAATGATACAGATCACTT 1396 Query 54761 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 54820 || || || ||||| |||||| ||||| ||||| | ||| || ||||| || | ||| Sbjct 1395 ATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGGCAATACGAGCC 1336 Query 54821 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGA 54880 || | ||||||||||| ||| | ||| || | || || ||| | ||||||| || | Sbjct 1335 GCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCTCGGCTGCCAAA 1276 Query 54881 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 54940 ||||||| ||| ||||| || ||| |||| || | |||||| |||| | || Sbjct 1275 TTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTGATAACTTTCAGTGTAATG 1216 Query 54941 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTG 55000 | || || | | ||| | ||||| ||||| || | ||| |||||||||||| Sbjct 1215 GCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAATACGAGATGTA 1156 Query 55001 ATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 |||||||| || ||| || | || ||| |||| |||||||| ||||||| ||| Sbjct 1155 ATTTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAAACAATTT 1100 >seq91934 Length=4437 Score = 295 bits (326), Expect = 8e-75 Identities = 507/727 (70%), Gaps = 17/727 (2%) Strand=Plus/Minus Query 23950 CCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 |||||||| | ||| | ||| || ||||| || |||||| ||||| || ||||| Sbjct 3584 CCAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAAT 3525 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| || || | || || || | ||| | || | || ||||||||||| || | Sbjct 3524 TCATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAG 3465 Query 24070 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 24129 | || ||||| || ||| | | || || || | | | |||||||||||||| Sbjct 3464 CTTCCGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACA 3405 Query 24130 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 | || ||| || ||||| || |||| ||||||||| | | ||| || || ||||| || Sbjct 3404 TTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAAT 3346 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 || || || ||||| || ||||| || || ||||||||||| || ||||| ||| Sbjct 3345 GTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTG 3286 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC 24307 |||||||| || || || || ||||| ||||||| | ||| ||| || ||| | | | Sbjct 3285 AAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTT 3226 Query 24308 ATGT--ATCCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||||| | || |||||||||||||| || ||| ||||| || || Sbjct 3225 GAGCCAATCCAAGACATT---GCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCA 3169 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || |||||||||||||| | || | | |||||||| || | || ||||||| | Sbjct 3168 ATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATA 3109 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||||||||| || || | ||||| ||||| ||||| || || |||||||| | ||| Sbjct 3108 CTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCC 3049 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || |||| ||||| ||| |||| ||||| | | ||||||||| || || || || Sbjct 3048 TCTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCG 2989 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTAGT 24599 || ||||| || |||| |||||| ||||| || | | ||| |||| ||| Sbjct 2988 GAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTC-GGTG--AGT 2932 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 || | ||| || |||||||||| | ||| |||||||| || |||||||| ||||| Sbjct 2931 TTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCT 2872 Query 24660 TCTGCCT 24666 || |||| Sbjct 2871 TCAGCCT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592255775584800