Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 122 7e-23
seq125840 95.1 1e-14
seq177482 89.7 4e-13
>seq64788
Length=4825
Score = 122 bits (134), Expect = 7e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | || || ||||| || ||||| |||||| ||| ||||| |
Sbjct 1587 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCC 1528
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || | ||| |||||| |||||||||||| | ||| |||||||
Sbjct 1527 GACACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1468
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | ||||| || || ||||||||||||||| || || ||||||||||
Sbjct 1467 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1408
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||||||||||| ||||| ||||| |||| |||||
Sbjct 1407 ATTCAAAAGGAGTCTACCCTTCATTTGGTCTTACG 1373
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
||||||||||| ||| | || ||||| || ||||| ||||| ||| || |||||
Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || || | | || ||||| |||||| ||||| || || | ||| ||||
Sbjct 2214 TCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGAT 2155
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|||||| | || || ||||| || |||||| | ||||| ||| || ||||||||
Sbjct 2154 CAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTAC 2095
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|| |||||||| |||||||||||||| |||| ||||
Sbjct 2094 AACATTCAAAAAGAATCTACTCTTCATTTGGTTCTACG 2057
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | || || ||||| ||||||||||| ||| ||| ||||| |
Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || | || |||||| ||||| |||||| | ||| ||| ||
Sbjct 331 GACACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAGGAAGGTATTCCCCCAGACCAG 272
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | ||||| || || || || ||||||||| | ||| || |||||||||||
Sbjct 271 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAAT 212
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||||||||||| || ||||| ||| |||| || ||
Sbjct 211 ATTCAAAAGGAGTCCACTCTCCACTTGGTATTGCG 177
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | ||||| ||||| || |||||||| ||| || ||||| ||
Sbjct 1359 ATGCAGATTTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTAGAACCATCA 1300
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || ||||| || || ||||| |||||| | || ||| |||
Sbjct 1299 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAA 1240
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212
||| | | ||||| || || || || ||||| ||| || | || | | || ||||
Sbjct 1239 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGTCGCACCCTCT--CTGACTACA 1182
Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|||| ||||||||||| || ||||| ||||||| ||
Sbjct 1181 ATATCCAAAAGGAATCCACCCTTCATTTGGTGTTGCG 1145
>seq125840
Length=3442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| ||||||| || || || || ||||||||| ||| || ||
Sbjct 538 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGCCTTAC 597
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || ||||| ||||| || ||||||||| | ||| |||||||
Sbjct 598 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 657
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | ||||| || || ||||||||||||||| || || |||| ||||||
Sbjct 658 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAT 717
Query 25215 ATTCAAAAGGAATCTAC 25231
|| ||||||||||| ||
Sbjct 718 ATCCAAAAGGAATCCAC 734
>seq177482
Length=2829
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| |||||| ||||||| ||||||| || ||||| || || |||||| |
Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || |||| || ||| || |||||||| | || ||||||
Sbjct 1487 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 1546
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212
||| | | || ||||| || || |||||||||||| || | ||| | |||| ||||
Sbjct 1547 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTT--CCGACTACA 1604
Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|||||||||| ||||| || | ||| |||| || ||
Sbjct 1605 ATATTCAAAAAGAATCAACATTGCACTTGGTATTGCG 1641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409807949199140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |