Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq91934 185 9e-42 seq64788 118 1e-21 >seq91934 Length=4437 Score = 185 bits (204), Expect = 9e-42 Identities = 468/706 (66%), Gaps = 12/706 (2%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| || || || || || || || || || | |||| Sbjct 2865 AGGCTGAAGCATCTTTTTGGACTGTAGAAGAAGTAGATCTCTCTAAAGATAATTCGGACT 2924 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 |||| | | |||||| ||||| | || ||| || || |||||||| || || | Sbjct 2925 GGGAAAAACTCACCGACAATGAGCGTTACTTTATCTCACATGTTCTGGCCTTCTTTGCTG 2984 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | ||| || || ||||| || ||||| || || ||||| | || ||||| || || Sbjct 2985 CTTCCGATGGTATTGTCAATGAAAATCTTGTTGAACGTTTTTCCCAAGAGGTACAAGTTA 3044 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || || ||||| || || || || |||||||| || || ||||| ||||||| Sbjct 3045 CAGAGGCACGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAATGTACACTCTGAAATGT 3104 Query 116895 ATTCGACCCTCATCGACACGTACGTGC--GCTCTTCGGAGGAGAAGCTCCGTT---TGTT 116949 || | | ||||||| ||| | | || | | | || | | || | || Sbjct 3105 ATAGTATTTTGATCGACAGCTACATTAAAGATC----GCGAACAA-CGCGATTATCTCTT 3159 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGAT 117009 || ||||| || |||||||| || || |||||||| ||||| || ||||| Sbjct 3160 TAATGCCATTGAAACGATGCCAGCTGTTAAGCGCAAGGCCGATTGGGCAATGTCTTGGAT 3219 Query 117010 CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGT 117069 | | | | |||| || || || ||| | | || || || || || |||||| | Sbjct 3220 TGGCTCAAAATCGGCCAATTTTGGTGAACGCATTATTGCATTTGCCGCTGTGGAGGGCAT 3279 Query 117070 CTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG 117129 ||||| |||||||| || | ||||||||||| |||||||| || || ||||| || Sbjct 3280 TTTCTTCAGTGGCAGTTTTGCTTCGATATTTTGGCTAAAGAAACGTGGTCTTATGCCTGG 3339 Query 117130 CCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||| || ||| ||| ||| | || || | ||||||||| | ||||| || |||| ||| Sbjct 3340 CCTTACATTCTCCAATGAGTTGATTTCTCGTGACGAGGGTTTACATTGTGATTTTG-CTG 3398 Query 117190 T-TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCA 117248 | || |||| || ||||| | || || || ||| | | | | | || || | | Sbjct 3399 TGTTAATGTTTAAACATTTAATACAACGTCCCAGCCGTGAGAGAATAACCGAAATAATAA 3458 Query 117249 CCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGG 117308 | || || || || || || ||| | |||||||| |||| || | || | | Sbjct 3459 CGGAAGCTGTAAAAATTGAACAAGAGTTCTTAACCGAAGCTTTGCCCGTCAATTTGATTG 3518 Query 117309 GACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGA 117354 | | ||||| || ||||||| |||| || || || || || || Sbjct 3519 GCATGAATTGTAAATTGATGTCGGAATATATTGAATTTGTAGCTGA 3564 >seq64788 Length=4825 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| |||||| | || || |||||||||||| | || || ||| | | Sbjct 1359 ATGCAGATTTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTAGAACCATCA 1300 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| || || | || || || || ||||| | ||||| Sbjct 1299 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAA 1240 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || ||| |||| || | ||||||||| |||||||| Sbjct 1239 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGTCGCACCCTCTCTGACTACAAT 1180 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| |||| || ||| | |||||||| Sbjct 1179 ATCCAAAAGGAATCCACCCTTCATTTGGTGTTGCG 1145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || ||||| ||||||||| | || |||||| | Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| |||||| ||||||| || || |||||||| ||| | || Sbjct 2214 TCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGAT 2155 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| || || | || || ||||| || || |||| ||||| | ||| ||| Sbjct 2154 CAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTAC 2095 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || || | || || ||| Sbjct 2094 AACATTCAAAAAGAATCTACTCTTCAT 2068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||||||||||||| | || || ||| | | Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || | ||||||| || || || || || ||| | |||||| Sbjct 331 GACACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAGGAAGGTATTCCCCCAGACCAG 272 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || ||| |||| || | || || | ||| ||||| Sbjct 271 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAAT 212 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| |||| || || | || ||||| Sbjct 211 ATTCAAAAGGAGTCCACTCTCCACTTGGTATTGCG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513947188197600