Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq177482 113 7e-20 seq64788 100 4e-16 seq194683 87.8 3e-12 seq125840 86.0 9e-12 >seq177482 Length=2829 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | |||||||| || || || |||||||| ||||| || || ||| Sbjct 1653 CCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAA 1594 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| ||||||||||||||||| | ||||||||| || ||| Sbjct 1593 AGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 1534 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 1533 ATTCCTTCTTTGTCCTG 1517 >seq64788 Length=4825 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| || ||||||||||| |||||| ||||| || | || | | || Sbjct 1831 TAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTC 1890 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| || || |||||||| | ||| ||||| ||||| |||||||| || || Sbjct 1891 TTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTC 1950 Query 146185 TTG 146187 ||| Sbjct 1951 TTG 1953 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/228 (67%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | || | ||| |||||||| | ||||| || ||| || || || ||||| || Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGA-ATGTTGTAATCGGA 1419 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || |||||||| ||||| || || || | ||| ||||| || || Sbjct 1420 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGG 1479 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| |||||||||||||| ||| || || ||| || Sbjct 1480 AATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAAC 1539 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || |||||||| ||||| || || |||| ||| || ||||| Sbjct 1540 TTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 >seq194683 Length=1703 Score = 87.8 bits (96), Expect = 3e-12 Identities = 203/306 (66%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 10342 CTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAAT 10401 |||| || | |||||| ||||| |||||| | ||| |||| | || ||| Sbjct 1302 CTGCTGGTTTCGATTTACGCAGTGCCTATGATCTAACTGTACCAGCTCGTGGCAAAGCGC 1243 Query 10402 TAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCA 10461 || |||| || || || || ||| | || || || | || | ||| |||| || Sbjct 1242 TAGTAAAGACCGACTTGCAAATTGAAGTGCCGAACGGTTCGTACGGTAGAGTAGCGCCTC 1183 Query 10462 GATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATT 10521 | |||| | | ||| | || || ||||||||| | || |||||||| ||||||||||||| Sbjct 1182 GCTCTGGTCTGGCTGTTAAGAACTTTATTGATGTGGGCGCTGGAGTTATTGACGAAGATT 1123 Query 10522 ATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATA 10581 | | || ||| | || || || |||| |||||||| | ||||||| | || Sbjct 1122 ACCGTGGCAATCTAGGCGTTGTACTATTCAATCATTCCGAAACAGATTTTGATGTCAAAC 1063 Query 10582 GAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAG 10641 | || ||| | || | || | ||||| ||| ||||| || ||| | || ||| Sbjct 1062 GTGGTGATCGCATTGCACAGCTCATATGCGAACGCATTTTCTACCCTGATCTGGAGCAAG 1003 Query 10642 TCGATA 10647 |||||| Sbjct 1002 TCGATA 997 >seq125840 Length=3442 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||||||| || ||||| || ||||| || || || Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || |||||||| || || || ||||| | ||| ||||| || ||| Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 645 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 644 ATACCTTCTTTGTCTTG 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741690726259200