Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq91934 268 9e-67 >seq91934 Length=4437 Score = 268 bits (296), Expect = 9e-67 Identities = 498/724 (69%), Gaps = 8/724 (1%) Strand=Plus/Minus Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||||||| | || || | ||| || |||||||| ||||| | ||| || | ||| | Sbjct 3584 CCAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAAT 3525 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || || || || || || | ||||| ||||| || | || ||| || || || | Sbjct 3524 TCATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAG 3465 Query 16170 CTTCAATGATTATATCTCTTACTACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAAC 16228 |||| | ||||| || ||| | | || | ||| | | || ||| ||||||||| Sbjct 3464 CTTCCGTTATTATTTCGGTTATT-CTCTCACGGCTGGGACGTTGTATTAAATGTTTAAAC 3406 Query 16229 ATTATACA-AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAA 16287 |||| ||| ||||||||||||||| || || ||||| | | || ||||| || || || Sbjct 3405 ATTA-ACACAGCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAA 3347 Query 16288 TGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGA 16347 |||||| || ||||| || || ||||| || | ||||||||| | ||||| ||| Sbjct 3346 TGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACT 3287 Query 16348 AAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA--CGTTCTAttt 16405 ||||| || || || || ||||||||||||| | || ||||| | | | |||| Sbjct 3286 GAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTT 3227 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | | | ||||| | ||||||| || || | |||||| ||| | || Sbjct 3226 TGA--GCCAATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCA 3169 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || |||||||| | ||||| || || || |||| ||| || | || || | | | Sbjct 3168 ATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATA 3109 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||||||||| || || | ||| ||||| || || || |||||||| || || | || Sbjct 3108 CTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCC 3049 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | | |||||| || | |||| | ||| | | ||||| || || || |||||| Sbjct 3048 TCTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCG 2989 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 ||| ||||| || || || | ||| ||||| | || || || | |||||| Sbjct 2988 GAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTT 2929 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 |||||| ||| |||||| || | ||| || |||||||||||||||||||| || || Sbjct 2928 TCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCA 2869 Query 16766 GCCT 16769 |||| Sbjct 2868 GCCT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461370115686000