Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq91934 230 2e-55 >seq91934 Length=4437 Score = 230 bits (254), Expect = 2e-55 Identities = 462/680 (68%), Gaps = 4/680 (1%) Strand=Plus/Minus Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 || |||||||||| ||||| || | ||||||||| || || | || || || | Sbjct 3555 AATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGACGGGCAAAGCT 3496 Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCA 14167 | |||||| || |||| ||| || ||||| || |||| || || || | ||| Sbjct 3495 TCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGTTATTCTCTCA 3436 Query 14168 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAAAATCACAATGAAGGCC 14226 ||| | | | ||| ||||||||| ||||| ||| |||||||||||||| | || Sbjct 3435 CGGCTGGGACGTTGTATTAAATGTTTAAACATTAA-CACAGCAAAATCACAATGTAAACC 3377 Query 14227 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 14286 ||| || | | ||| | || || || ||||| | || ||||| | || ||||| || Sbjct 3376 CTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGACCACGTTTCTT 3317 Query 14287 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 || ||||||||| | ||| || || ||||| || ||||| || || ||||| || Sbjct 3316 TAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTCCACAGCGGCAAATGC 3257 Query 14347 TATTAATCGTTCTCCAAACGATGCTT-TTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 || | ||||| ||||| || ||||| | | ||||| | ||||| || | Sbjct 3256 AATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCA-ATCCAAGACATTGCCCAATCGG 3198 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG 14465 || |||| | ||| |||||||| |||||||| | || || | || Sbjct 3197 CCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAATCGCGTTGTTCGC 3138 Query 14466 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14525 | | |||||| | || || | | ||||||||||||||||||| |||||||| | Sbjct 3137 GATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGTACATTTTCCATGG 3078 Query 14526 CTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTT 14585 | || || |||||||| ||||| | || |||| |||||||||| | |||| | || Sbjct 3077 CAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTTGGGAAAAACGTT 3018 Query 14586 CGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14645 | | | ||||||||| || |||||||| ||| ||||| || |||| | | | | Sbjct 3017 CAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGA 2958 Query 14646 TAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTA 14705 ||||||| |||| | | | ||||||||| ||| || | ||| ||||| ||||||| Sbjct 2957 TAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTATCTTTAGAGAGATCTA 2898 Query 14706 CTTCATCAACTGTCCaaaaa 14725 |||| || || ||||||||| Sbjct 2897 CTTCTTCTACAGTCCAAAAA 2878 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTT-AGAAATAACGCCCATTTT 13914 || |||||| ||||||| | |||||||||||| | ||| |||| | ||||| | || Sbjct 3813 TAGAAATCAGCATCTAAAGTAAAAACATTATC-TAAACGTTGAGAAGTCACGCCTAACTT 3755 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||||| ||| | ||||||||| || |||||||| |||| || || |||| Sbjct 3754 CTGATATTCACCCACTTTGCGTTCAAAGAAATTGGTTTTACCATCCAAAGAAATCATTTC 3695 Query 13975 CATAAAATCAAATGGATT 13992 |||||| | || ||||| Sbjct 3694 CATAAAGGCGAAGGGATT 3677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481154749006800