Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq91934 107 4e-18 >seq91934 Length=4437 Score = 107 bits (118), Expect = 4e-18 Identities = 237/353 (67%), Gaps = 7/353 (2%) Strand=Plus/Plus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||| | |||| ||| |||| ||||| || || || || || ||||| ||||| | Sbjct 3237 ATTTTGGTGAACGCATTATTGCATTTGCCGCTGTGGAGGGCATTTTCTTCAGTGGCAGTT 3296 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | || || || || ||| | ||||| | ||| || ||||||| || || | |||||||| Sbjct 3297 TTGCTTCGATATTTTGGCTAAAGAAACGTGGTCTTATGCCTGGCCTTACATTCTCCAATG 3356 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080 |||| |||||| | ||||| ||| | ||| | || ||||| | |||| ||| | Sbjct 3357 AGTTGATTTCTCGTGACGAGGGTTTACATTGTGATTTTGCTGTGTTAATGTTTAAACA-- 3414 Query 102081 GTTTTGTTGATAC--CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCG 102138 ||| | || |||| | | || || || ||||| | || ||||| || Sbjct 3415 --TTTAATACAACGTCCCAGC-CGTGAGAGAATAACCGAAATAATAACGGAAGCTGTAAA 3471 Query 102139 AATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAA 102198 |||||||||||| || | || | | |||| || || || | || ||||| || || Sbjct 3472 AATTGAACAAGAGTTCTTAACCGAAGCTTTGCCCGTCAATTTGATTGGCATGAATTGTAA 3531 Query 102199 GTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGG 102251 |||||| | || ||||||||||| || ||| | || |||||| ||| Sbjct 3532 ATTGATGTCGGAATATATTGAATTTGTAGCTGATCGTTTGTTAGTTGAATTGG 3584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987079761822050