Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq41982 531 6e-146
seq91934 289 4e-73
seq39385 89.7 6e-13
>seq41982
Length=5201
Score = 531 bits (588), Expect = 6e-146
Identities = 1497/2277 (66%), Gaps = 28/2277 (1%)
Strand=Plus/Minus
Query 62035 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094
|||| |||| || ||||| || | | | ||| ||||| || | | ||| ||||| |
Sbjct 3365 CCTTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGC 3306
Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154
| || |||| || |||| | || ||||| || || | ||| || | |
Sbjct 3305 CGGTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGG 3246
Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214
| || || | ||| ||||| | || ||||||||||||||||| || || | || || |
Sbjct 3245 GTTCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTG 3186
Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 62273
|||||| || | ||||| | ||| ||||||| || ||||| | || | ||||
Sbjct 3185 CCATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACG-AATA 3127
Query 62274 TCTTCTGGAAGGTT-TGTATTC--TGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330
|||| |||| | | ||| || || || || | || ||||| || || ||
Sbjct 3126 TCTTTGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTC 3067
Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390
|| || |||| ||||| | | || |||||| || | || | ||| | || || |
Sbjct 3066 ATTTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATA 3007
Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450
| ||||||||| || | || | | || |||||||| |||||| || || | ||
Sbjct 3006 TTGAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGAT 2947
Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510
|||||||| ||||| ||||| || || || ||||| |||||||| |||| | ||| |
Sbjct 2946 TCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAA 2887
Query 62511 TTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569
|||| | ||| | |||| ||||||| ||||| | | | ||| ||||| | ||| |
Sbjct 2886 TTTCGTACACCATGCTGTT-TGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGT 2828
Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62629
|| | |||||||| || || ||||| | | || |||
Sbjct 2827 AGGAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATA 2768
Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689
|| ||||| || ||| ||| || | | || |||||| || || ||||| || |||||
Sbjct 2767 AGTTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATA 2708
Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749
||| ||||| || || | | ||||| || | ||| || | || ||
Sbjct 2707 AATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGGGGAAACG 2648
Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809
| | ||| || | ||| || | || || ||||| || || ||||| | ||| |
Sbjct 2647 CATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAG 2588
Query 62810 ATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867
|||||| |||| || || || | ||||||| | ||||| ||||| ||||| ||||||
Sbjct 2587 ATTAGA--TTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGA 2530
Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA-- 62925
||| || ||| ||||| |||| || | ||| ||| || ||| ||
Sbjct 2529 TTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGC 2470
Query 62926 -TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984
| |||||||| || | || | || |||| |||||||||||||| ||||| | |
Sbjct 2469 GTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTGCG 2410
Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044
| ||| | || || || || || | ||||| ||||| ||||| || | |||||| ||
Sbjct 2409 GAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGG 2350
Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104
|||||||| ||||| |||||||| || | ||| | |||||||| ||||| | |||
Sbjct 2349 TTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGA 2290
Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTC 63163
| ||| || || || ||| | | | ||||| | || | |||| | ||||
Sbjct 2289 GCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGCCTTCA 2230
Query 63164 TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223
| |||| || ||||||||| |||||| || | |||||||| | | || | |||
Sbjct 2229 T-TTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGG 2171
Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283
||||| | |||||||| |||||||| ||||| | || | |||| ||||||||| |
Sbjct 2170 ACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAA 2111
Query 63284 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342
||| || ||||| || || ||| ||||||||||| | ||| || || || || || ||||
Sbjct 2110 ATCGGGTATCCACAGGGC-ATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTAT 2052
Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402
| || || | ||| | || | | |||||| |||||||| || ||||| || ||||| |
Sbjct 2051 TTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAA 1992
Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462
|||| || |||||| || || ||||||| || | || || ||| | || |
Sbjct 1991 ATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCC 1932
Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522
| | ||| || | | || ||||| | || || ||||| ||| | || |||
Sbjct 1931 TAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGG 1872
Query 63523 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580
| | || | | | || || || || || || || ||| || || | |||||
Sbjct 1871 CCCTTATGCAGTGCACGTTAAT--GCCAATACCACCAGCAGATTTGGAAATCATGGCGCA 1814
Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640
| ||| | | | | || ||||| || |||| | | |||| | | || || ||
Sbjct 1813 TTGTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCA 1754
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
|||| ||| | || | || | ||| ||| || || || || || || |||||
Sbjct 1753 CGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAA 1694
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760
| ||||| | | || || || || || || || ||||| || | ||| ||
Sbjct 1693 ATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTAT 1634
Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820
|||| || || | ||||||||| ||||| |||||||||||||| || || |||||
Sbjct 1633 ACCTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTT 1574
Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880
|| ||| |||||| | |||| || || || |||||||| ||||| |||||| || ||
Sbjct 1573 CAGCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCACGATC 1514
Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACT 63940
|||||||| |||||| | || || || | || | || | || |||||
Sbjct 1513 ATAAATAATGGACGAATTCAAACGTTCTGCATTCTTCTGCACCACAT-TGTAGTGATACT 1455
Query 63941 -TGAAATAATCGGAGAA-TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 63998
||||| || || ||| | || ||| | | | | |||||||| | | | |||
Sbjct 1454 CCGAAATCATGGGCGAAGTTTTACCCGTCTCTTTG-TTAACATAATGATACAGATCACTT 1396
Query 63999 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCG 64058
|| || || ||||| |||||| ||||||||||| | ||| || | ||| || | ||
Sbjct 1395 ATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGGCAATACGAGCC 1336
Query 64059 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 64118
|| | ||||||||||| ||| | ||| || | || || ||| | |||||||||| |
Sbjct 1335 GCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCTCGGCTGCCAAA 1276
Query 64119 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATT 64178
||||||| ||| ||||| || ||| |||| || | ||||| |||| | ||
Sbjct 1275 TTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTGATAACTTTCAGTGTAATG 1216
Query 64179 TTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTG 64238
| || || | | |||| | ||||| |||||||| | ||| ||||||||| ||
Sbjct 1215 GCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAATACGAGATGTA 1156
Query 64239 ATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64294
|||||||| || ||| || | || ||| |||| |||||||| ||||||| |||
Sbjct 1155 ATTTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAAACAATTT 1100
>seq91934
Length=4437
Score = 289 bits (320), Expect = 4e-73
Identities = 511/733 (70%), Gaps = 29/733 (4%)
Strand=Plus/Minus
Query 33397 CCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456
|||||||| | ||| | ||| || || ||||| |||||| ||||| || |||||
Sbjct 3584 CCAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAAT 3525
Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516
|||| || || | || || || | ||| | || | || ||||||||||| ||| |
Sbjct 3524 TCATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAG 3465
Query 33517 CATTTGTTATAATAAATCTAACGGTT--TCT-TCAC---TCGGTGGATGTAATAAATGTT 33570
| | ||||| || ||||| ||| |||| | || | |||| ||||||||
Sbjct 3464 CTTCCGTTATTATTT------CGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTT 3411
Query 33571 TAAACATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629
||||||| || ||| || ||||| || || | ||||||||| | | ||| || || ||
Sbjct 3410 TAAACATTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTG 3352
Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689
|| || || || || ||||| || ||||| || || ||||||||||| ||||| ||
Sbjct 3351 GAGAATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTG 3292
Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC- 33748
|| ||||| || || || || || ||||| ||||||| | || ||| || |||
Sbjct 3291 CCACTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCC 3232
Query 33749 GCTGTCATGT--ATCCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803
| | | | ||||| | || |||||||||||||| || ||| ||||||
Sbjct 3231 GATTTTGAGCCAATCCAAGACATT---GCCCAATCGGCCTTGCGCTTAACAGCTGGCATC 3175
Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863
||||| ||||||||||||||||| | || | | |||||||| || | ||||||
Sbjct 3174 GTTTCAATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATC 3115
Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923
|||| |||||||||||| || || | ||||| ||||| || || || || ||||||||
Sbjct 3114 AAAATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAG 3055
Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983
| ||||| |||| || || ||| |||| ||||| | | ||||||||| || ||
Sbjct 3054 CGTGCCTCTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATA 2995
Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGT 34040
||||| || ||||| || |||| |||||| ||||| || | | ||| |||
Sbjct 2994 CCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTC-GGT 2936
Query 34041 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100
| ||||| | ||| || |||||||||| | ||| |||||||| || ||||||||
Sbjct 2935 G--AGTTTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878
Query 34101 GATGCCTCTGCCT 34113
||||| || ||||
Sbjct 2877 GATGCTTCAGCCT 2865
>seq39385
Length=6125
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 28696 AATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 28755
||| |||| || ||||| || |||| |||||||| ||||| || || || || | |||
Sbjct 2557 AATGCCCAGCTCTTTGACTTGGGTTAAAGATCTCCAGTCCATATTTGCACTGCCCAGATA 2616
Query 28756 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28804
||| ||| |||| || || |||||||||||||| || | ||| ||||||
Sbjct 2617 AATGTGTTTATTGTCCGAAATCCAAAATTTTGTGTGTAAAACACCTCCT 2665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628262659072800
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