Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq41982 352 3e-92 seq91934 239 4e-58 >seq41982 Length=5201 Score = 352 bits (390), Expect = 3e-92 Identities = 1191/1837 (65%), Gaps = 26/1837 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| ||| | |||||| |||| ||||||||| || || Sbjct 3360 TCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGCCGGTC 3301 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | |||| | || ||||| || ||||| ||| |||| | || | | Sbjct 3300 TTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGGGTTCA 3241 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | || ||||||||||| || || || || | |||||||||||| Sbjct 3240 GCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTGCCATT 3181 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | | || || ||||||||||| || ||||||| | |||| | | Sbjct 3180 TGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACGAATATCTT-T 3122 Query 37030 GGTAA----ATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085 || || ||||| ||| ||||| || || | | |||| | || || || || Sbjct 3121 GGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTCATTTC 3062 Query 37086 ATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | || ||| | || | ||| ||| | | | || |||| |||| | || Sbjct 3061 GTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATATTGAA 3002 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 ||||| |||| || | ||| ||||| |||||| ||||| || |||| || ||||| Sbjct 3001 TTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGATTCATT 2942 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||| | || ||||| | ||||| ||||| ||||| || || | ||| | ||||| Sbjct 2941 ATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAATTTCG 2882 Query 37266 CAATCCATG-TGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | ||||| ||| || ||| ||| ||| | || |||| | ||| ||||| || || Sbjct 2881 TACACCATGCTGT-TTGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGTAGGAG 2823 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||||||||| |||||||| || || ||||| | || | || ||| || | Sbjct 2822 TTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATAAGTTT 2763 Query 37385 CATAAGGTCCGTAAATTTTAGCT-AGTTCGCAACTAGATTCTAGTGCGGCATAATATATT 37443 ||||||| || || |||| | | ||| ||||||| ||| | |||| ||||||| || Sbjct 2762 CATAAGGACC-TAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATAAATA 2704 Query 37444 GTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT 37503 ||||||||||||||| |||||| | || | |||||| ||| | | | | || | Sbjct 2703 GTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGGGGAAACGCATT 2644 Query 37504 AATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTA 37563 || || || || || | |||||| ||||| || || || || | ||| |||| Sbjct 2643 AAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGATTA 2584 Query 37564 GATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTA 37623 ||| | | || || |||||| | || || ||||| ||||| || |||||||| Sbjct 2583 GATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTG 2524 Query 37624 ACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTA---TTAACA 37680 | | ||| |||| || | || || | || ||| || | | | ||| Sbjct 2523 GTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGCGTCACA 2464 Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT 37740 || || | | | || || | | |||||| || || | ||||| | | | ||| Sbjct 2463 AACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATC--GGGTGCGGAAT 2406 Query 37741 --TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 | || ||| || ||||| | ||||| | |||| || || | ||| || || Sbjct 2405 ACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGGTTAC 2346 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 || |||||| | ||| || || | || || || || ||| ||||| |||||| | Sbjct 2345 TCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGAGCTT 2286 Query 37859 CGATAATAGATTTCCATAAACTTCTTGCTTTAACGAT-CGCTTTAAttt-ttttCTTTGT 37916 | || || | ||| | | || || ||| | || ||| ||| ||| | | Sbjct 2285 CAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGCCTTCAT--T 2228 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATAATCCTGGA 37974 ||| || | |||| |||| | || || ||||| || || ||| | || ||| Sbjct 2227 TTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGA--CCAGGA 2170 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 |||| | |||||||||| ||||| ||| ||| || |||||| | || |||||| ||| Sbjct 2169 CATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAAA 2110 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 || |||| ||| | ||| |||| |||| | | ||| | ||||| || || ||| Sbjct 2109 TCGGGTATCCACAGGGCATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTATTT 2050 Query 38095 TTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 || |||| | ||| || || ||||| | ||||| || || | |||||| | | | Sbjct 2049 TTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAAAT 1990 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 |||||||| | ||| | || || |||| | ||| | | || ||| | | || Sbjct 1989 GCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCCTA 1930 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 | ||| || || | ||||| || ||||||| |||| || |||| ||||| || Sbjct 1929 AGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGGCC 1870 Query 38275 CGTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 | ||| | | || ||| || || ||||| ||| ||| || || | |||||||| Sbjct 1869 CTTAT-GCAGTGCACGTTAATGCCAATACCACCAGCAGATTTGGAAATCATGGCGCATTG 1811 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 || | | | || |||||||| ||| ||| || || | | | || || Sbjct 1810 TTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCACGA 1751 Query 38394 AGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 |||| ||| || || || | || ||| || || || || |||||| | || | Sbjct 1750 TGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAAATA 1691 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 || ||||| | ||||| ||||| || | |||||| ||| | || || ||||| Sbjct 1690 ACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTATACC 1631 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573 || || ||| ||||||| |||||| ||||||||||| | || ||| |||| ||| || Sbjct 1630 TATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTTCAG 1571 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 | ||| ||| | || | ||| || | |||||||||| Sbjct 1570 CAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAA 1534 >seq91934 Length=4437 Score = 239 bits (264), Expect = 4e-58 Identities = 482/704 (68%), Gaps = 17/704 (2%) Strand=Plus/Minus Query 11455 TAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTAT 11514 ||| || | ||| || || ||||| ||||| | ||||| || ||||||||| || || Sbjct 3574 TAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAAT 3515 Query 11515 AAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGAT 11574 | || || || | ||| | || || ||||| | ||| || || || || || | || Sbjct 3514 CAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTAT 3455 Query 11575 TATCGACGTTATAACTTCCTTAGATGGTG-GATGTAATAAATGTTTAAACATTAAACAC- 11632 ||| ||||| || | | ||| | |||| |||||||||||||||||| ||| Sbjct 3454 TATTTCGGTTATT-CTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAA-CACA 3397 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||||||||||||||||| ||||| | | || | ||||| || ||||| | || Sbjct 3396 GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCA 3337 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| | || ||||| |||| ||||||||| | |||||| ||| ||||| || Sbjct 3336 GGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATG 3277 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAG-ATATC 11809 ||||||||||| |||||||| | | | ||| ||| | | | || || ||| Sbjct 3276 CCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCAATC 3217 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || | |||||||| || || || || | ||| ||||| || || ||||| Sbjct 3216 CAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAG 3157 Query 11870 A---AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 | ||| || ||| |||| | | || | || || || | |||||||||| Sbjct 3156 AGATAATCGCGTTGTTC---GCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATT 3100 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || || || | ||||||||| || ||||| || ||||||||||| |||||||||| | Sbjct 3099 TCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACT 3040 Query 11987 TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 ||||| || |||| | ||| | | ||| ||||| ||||||||||| || ||| Sbjct 3039 TGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCA 2980 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCA 12106 || || || || | |||| |||||||| || | | || | ||| ||||| || Sbjct 2979 AAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTC- 2921 Query 12107 TCTAA--ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 | || |||||| || | |||||||||||| || ||||||||| Sbjct 2920 -CGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467368070834400