Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq41982 511 6e-140 seq91934 297 3e-75 seq39385 93.3 6e-14 >seq41982 Length=5201 Score = 511 bits (566), Expect = 6e-140 Identities = 1492/2277 (66%), Gaps = 28/2277 (1%) Strand=Plus/Minus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 |||| |||| || ||||| || | | | ||| ||||| || | | ||| ||||| | Sbjct 3365 CCTTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGC 3306 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || |||| || |||| | || ||||| || || | ||| || | | Sbjct 3305 CGGTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGG 3246 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | || || | ||| ||||| | || ||||||||||||||||| || || | || || | Sbjct 3245 GTTCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTG 3186 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATA 65066 |||||| || | ||||| | ||| ||||||| || ||||| | || | |||| Sbjct 3185 CCATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCAC-GAATA 3127 Query 65067 TCTTCTGGAAGGT-TTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 |||| |||| | | ||| || || || || | || | ||||| || || || Sbjct 3126 TCTTTGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTC 3067 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || || |||| ||||| | | || |||||| || | || | ||| |||| || | Sbjct 3066 ATTTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATA 3007 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 | |||||||| || | || | | || |||||||| |||||| || || | || Sbjct 3006 TTGAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGAT 2947 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 |||||||| ||||| ||||| || || || ||||| |||||||| |||| | ||| | Sbjct 2946 TCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAA 2887 Query 65304 TTTCTAAGACCGT-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 65362 |||| | ||| | |||| ||||||| ||||| | | ||| ||||| | ||| | Sbjct 2886 TTTCGTACACCATGCTGTT-TGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGT 2828 Query 65363 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 65422 || |||||| || || ||||| | | || ||| Sbjct 2827 AGGAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATA 2768 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 || || || || ||| ||| || | | ||||||||| || || ||||| || ||||| Sbjct 2767 AGTTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATA 2708 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 ||| |||||||| || | | ||||| || | ||| || | || || Sbjct 2707 AATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGGGGAAACG 2648 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | | ||| || | ||| || | || || ||||| || || ||||| | ||| | Sbjct 2647 CATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAG 2588 Query 65603 ATTAGAGATTTC--AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 ||| ||||||| || || || | ||||||| | ||||| ||||| ||||| |||||| Sbjct 2587 ATT--AGATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGA 2530 Query 65661 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCT 65717 ||| || ||| ||||| |||| || | ||| ||| || || | ||| Sbjct 2529 TTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGC 2470 Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 | |||||||| || | || | || |||| |||||| ||||||| ||||| | | Sbjct 2469 GTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTGCG 2410 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | ||| | || || || || || | ||||| ||||| || || || | |||||| || Sbjct 2409 GAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGG 2350 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 |||||||| ||||| |||||||| || | ||| | |||||||| ||||| | ||| Sbjct 2349 TTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGA 2290 Query 65898 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTC 65956 | ||| || || || ||| | | | ||||| | || | |||| | | ||| Sbjct 2289 GCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTG-CTTTGCCTTC 2231 Query 65957 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016 |||| || ||||||||| |||||| || | |||||||| | | || ||||| Sbjct 2230 ATTTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGG 2171 Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076 ||||| | |||||||| |||||||| ||||| | || | |||| ||||||||| | Sbjct 2170 ACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAA 2111 Query 66077 ATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 ||| || ||||| || || ||| |||| |||||| | ||| || || || || || |||| Sbjct 2110 ATCGGGTATCCACAGGGC-ATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTAT 2052 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 | || || | ||| | || | | |||||| ||||||| || ||||| || ||||| | Sbjct 2051 TTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAA 1992 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 |||| || |||||| || || ||||||| || | || || ||| | || | Sbjct 1991 ATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCC 1932 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 | | ||| || | | ||||| || || || || || || ||| | | || | | Sbjct 1931 TAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGG 1872 Query 66316 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | | || | | | || || || || || || || ||| || || | ||||| Sbjct 1871 CCCTTATGCAGTGCACGTTAAT--GCCAATACCACCAGCAGATTTGGAAATCATGGCGCA 1814 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | ||| | | | | || || || ||| |||| ||| |||| | | || || || Sbjct 1813 TTGTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCA 1754 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 |||| ||| | || || | ||| ||| || || || || || || ||||| Sbjct 1753 CGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAA 1694 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 | ||||| | | || || || || || || || ||||| || | ||| || Sbjct 1693 ATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTAT 1634 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 |||| || || | ||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct 1633 ACCTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTT 1574 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 || ||| |||||| | |||| || || || |||||||| ||||| |||||| || || Sbjct 1573 CAGCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCACGATC 1514 Query 66674 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 66733 |||||||| ||| || | || || || | || |||| | || ||||| Sbjct 1513 ATAAATAATGGACGAATTCAAACGTTCTGCATTCTTCTGCACCACAT-TGTAGTGATACT 1455 Query 66734 -TGAAATAATCGGAGAA-TGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCC 66791 ||||| || || ||| | || ||| | | | | || ||||| | | | ||| Sbjct 1454 CCGAAATCATGGGCGAAGTTTTACCCGTCTCTTTG-TTAACATAATGATACAGATCACTT 1396 Query 66792 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 66851 || || || ||||| |||||| ||||| ||||| | ||| || ||||| || | ||| Sbjct 1395 ATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGGCAATACGAGCC 1336 Query 66852 GCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 66911 || | ||||||||||| ||| | ||| || | || || ||| | |||||||||| | Sbjct 1335 GCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCTCGGCTGCCAAA 1276 Query 66912 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 66971 ||||||| ||| ||||| || ||| |||| || | |||||| |||| | || Sbjct 1275 TTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTGATAACTTTCAGTGTAATG 1216 Query 66972 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTG 67031 | || || | | ||| | ||||| ||||| || | ||| |||||||||||| Sbjct 1215 GCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAATACGAGATGTA 1156 Query 67032 ATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 67087 |||||||| || ||| || | || ||| |||| |||||||| ||||||| ||| Sbjct 1155 ATTTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAAACAATTT 1100 >seq91934 Length=4437 Score = 297 bits (328), Expect = 3e-75 Identities = 504/724 (70%), Gaps = 11/724 (2%) Strand=Plus/Minus Query 35973 CCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 36032 |||||||| | ||| | ||| || |||||||| |||||| ||||| || ||||| Sbjct 3584 CCAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAAT 3525 Query 36033 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 36092 |||| || || | || || || | ||| | || | || ||||||||||| || | Sbjct 3524 TCATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAG 3465 Query 36093 CGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 36152 | || ||||| || ||| | | || || || | | | |||||||||||||| Sbjct 3464 CTTCCGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACA 3405 Query 36153 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 | || ||| || ||||| || |||| ||||||||| | | ||| || || ||||| || Sbjct 3404 TTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAAT 3346 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271 || || || ||||| || ||||| || || ||||||||||| || ||||| ||| Sbjct 3345 GTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTG 3286 Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGT 36329 |||||||| || || || || ||||| ||||||| | || ||| || ||| | | | Sbjct 3285 AAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTT 3226 Query 36330 CATGTA-TCCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | | |||| | || |||||||||||||| || ||| ||||| || || Sbjct 3225 GAGCCAATCCAAGACATT---GCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCA 3169 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || |||||||||||||| | || | | |||||||| || | || ||||||| | Sbjct 3168 ATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATA 3109 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||||||||| || || | ||||| ||||| ||||| || || |||||||| | ||| Sbjct 3108 CTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCC 3049 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || |||| ||||| ||| |||| ||||| | | ||||||||| || || || || Sbjct 3048 TCTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCG 2989 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 || ||||| || |||| |||||| ||||| || || || || ||||| Sbjct 2988 GAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTT 2929 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| || |||||||||| | ||| |||||||| || |||||||| ||||| || Sbjct 2928 TCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCA 2869 Query 36686 GCCT 36689 |||| Sbjct 2868 GCCT 2865 >seq39385 Length=6125 Score = 93.3 bits (102), Expect = 6e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 31225 TCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATATGTGTA 31284 || ||||| || ||||| |||||||| |||||||| || || || | |||||| ||| || Sbjct 2567 TCTTTGACTTGGGTTAAAGATCTCCAGTCCATATTTGCACTGCCCAGATAAATGTGTTTA 2626 Query 31285 TTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 31323 || || || |||||||||||||| || | ||| |||||| Sbjct 2627 TTGTCCGAAATCCAAAATTTTGTGTGTAAAACACCTCCT 2665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656547853628400