Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 122 9e-23
seq177482 118 1e-21
seq125840 89.7 5e-13
>seq64788
Length=4825
Score = 122 bits (134), Expect = 9e-23
Identities = 168/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| || || || |||| |||||||| ||||||||||| |||||| |
Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1420
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||| | || | ||||| | ||||||||||| |||| | |||||| ||||| || ||
Sbjct 1421 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGG 1479
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|| |||||||| || ||| |||| | |||| | ||| | ||||||| || || |
Sbjct 1480 AATACCTTCTTTATC-TTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAA 1538
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
| || | ||| | || || || ||||| || || ||||| || ||||||
Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCATA 1588
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| || |||| ||||| |||||||||||||| |||||| |
Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| || |||||||| ||| | || |||||||| ||||| || ||
Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 2164
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| || || || ||| |||| | || | | ||| | || || | || || ||
Sbjct 2165 ATGCCCTCCTTATC-TTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGAC 2223
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | |||||||| || || || || ||||| ||||||||
Sbjct 2224 CTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCAT 2271
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| || || ||||||| || ||||||||||| ||||| |||||| |
Sbjct 1589 CCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGAC 1648
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||| | || | ||||| | ||||||||||| | || | ||| || ||||| || ||
Sbjct 1649 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGG 1707
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| |||||| ||| | | ||| | || || | || || ||
Sbjct 1708 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGAC 1767
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | || || || || || ||||| ||||||||||||||
Sbjct 1768 CTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| | ||| |||||||| | |||| |||||||||||| || || |||||||| ||
Sbjct 9 TCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTA 68
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| |||||| || | | ||| | || |||| ||||| || || | || |
Sbjct 69 TCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTGATA 128
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| ||||| ||||| ||||| ||||| ||||||||
Sbjct 129 GTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163
>seq177482
Length=2829
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || ||||| | || || ||||||||||| || || ||| | |||||
Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCA 1582
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| | || || |||||| | |||| |||||||||||| || || || |||||||||
Sbjct 1581 TCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 1522
Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| ||| | || | ||| | | ||| | ||||| | ||| || ||||||| || |
Sbjct 1521 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGAT 1463
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767
||||| || |||| ||||| |||||||| ||||| ||
Sbjct 1462 GGTCTTACCCGTCAGGGTTTTGACGAATATCTGCATGGC 1424
>seq125840
Length=3442
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || || ||||| || || || ||| || |||| ||||| | ||||||||
Sbjct 734 GTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCG 675
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| |||||| ||||| || || || ||||||||||| |||||| ||
Sbjct 674 GCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 615
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | ||| | |||||| ||||| || || | ||| | ||||| || || || |||
Sbjct 614 ACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTT 555
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 554 TTGACGAAGATCTGCAT 538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494839279992000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |