Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq64788 122 9e-23 seq177482 118 1e-21 seq125840 89.7 5e-13 >seq64788 Length=4825 Score = 122 bits (134), Expect = 9e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || || |||| |||||||| ||||||||||| |||||| | Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1420 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | ||||||||||| |||| | |||||| ||||| || || Sbjct 1421 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGG 1479 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || |||||||| || ||| |||| | |||| | ||| | ||||||| || || | Sbjct 1480 AATACCTTCTTTATC-TTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAA 1538 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | ||| | || || || ||||| || || ||||| || |||||| Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCATA 1588 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| ||||| |||||||||||||| |||||| | Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || |||||||| ||| | || |||||||| ||||| || || Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 2164 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| |||| | || | | ||| | || || | || || || Sbjct 2165 ATGCCCTCCTTATC-TTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGAC 2223 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| || || || || ||||| |||||||| Sbjct 2224 CTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCAT 2271 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || ||||||| || ||||||||||| ||||| |||||| | Sbjct 1589 CCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGAC 1648 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | ||||||||||| | || | ||| || ||||| || || Sbjct 1649 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGG 1707 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| ||| | | ||| | || || | || || || Sbjct 1708 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGAC 1767 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || || || || ||||| |||||||||||||| Sbjct 1768 CTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||| |||||||| | |||| |||||||||||| || || |||||||| || Sbjct 9 TCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTA 68 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | ||| | || |||| ||||| || || | || | Sbjct 69 TCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTGATA 128 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| ||||| ||||| |||||||| Sbjct 129 GTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163 >seq177482 Length=2829 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || ||||| | || || ||||||||||| || || ||| | ||||| Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCA 1582 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | || || |||||| | |||| |||||||||||| || || || ||||||||| Sbjct 1581 TCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 1522 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | ||||| | ||| || ||||||| || | Sbjct 1521 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGAT 1463 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 ||||| || |||| ||||| |||||||| ||||| || Sbjct 1462 GGTCTTACCCGTCAGGGTTTTGACGAATATCTGCATGGC 1424 >seq125840 Length=3442 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| || || || ||| || |||| ||||| | |||||||| Sbjct 734 GTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCG 675 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| |||||| ||||| || || || ||||||||||| |||||| || Sbjct 674 GCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 615 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||| ||||| || || | ||| | ||||| || || || ||| Sbjct 614 ACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTT 555 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 554 TTGACGAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494839279992000