Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq91934 241 1e-58
>seq91934
Length=4437
Score = 241 bits (266), Expect = 1e-58
Identities = 473/692 (68%), Gaps = 8/692 (1%)
Strand=Plus/Minus
Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765
|||||| | ||| |||||||||| ||||| || | ||||||||| || || | || ||
Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506
Query 13766 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGT 13825
|| | | |||||| || |||| ||| || ||||| || |||| || ||
Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGT 3446
Query 13826 AATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAAAATCAC 13884
|| ||||| ||| | | | ||| ||||||||| ||||| ||| ||||||||||
Sbjct 3445 TATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAA-CACAGCAAAATCAC 3387
Query 13885 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13944
|||| | ||||| || | | ||| | || || || ||||| | || ||||| | |
Sbjct 3386 AATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGAC 3327
Query 13945 CTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGAATATTCCCTCAAC 14002
| ||||| |||| ||||||||| | |||||| || | | ||| ||| || ||||| ||
Sbjct 3326 CACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAA--GAAAATGCCCTCCAC 3269
Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT-TTTTGTTCGATATCCATTTTC 14061
|| ||||| || || | ||||| ||||| || ||||| | | |||||
Sbjct 3268 AGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCA-ATCCAAGACA 3210
Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121
| ||||| || | || |||| | ||| |||||||| |||||||| | ||| |
Sbjct 3209 TTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAAT 3150
Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181
| | || | | |||||| | || || | | |||||||||||||||||||
Sbjct 3149 CGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGTA 3090
Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241
|||||||| || || || |||||||| || || | || || | |||||| ||
Sbjct 3089 CATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTT 3030
Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301
| |||| | ||| | | ||||||||| || |||||||| ||| ||||| || ||||
Sbjct 3029 GGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCCA 2970
Query 14302 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361
| | | |||||||| |||| | | | ||||||||| ||| || || ||| |
Sbjct 2969 GAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTATCTT 2910
Query 14362 TAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393
|||| ||||||||||| || || |||||||||
Sbjct 2909 TAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878
Score = 89.7 bits (98), Expect = 5e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTT-AGAAATAACGCCCATTTT 13582
|| |||||| ||||||| | |||||||||||| | ||| |||| | ||||| | ||
Sbjct 3813 TAGAAATCAGCATCTAAAGTAAAAACATTATC-TAAACGTTGAGAAGTCACGCCTAACTT 3755
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
|||||||||| ||| | ||||||||| || |||||||| |||| || || ||||
Sbjct 3754 CTGATATTCACCCACTTTGCGTTCAAAGAAATTGGTTTTACCATCCAAAGAAATCATTTC 3695
Query 13643 CATAAAATCAAATGGATT 13660
|||||| | || |||||
Sbjct 3694 CATAAAGGCGAAGGGATT 3677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478543611534000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |