Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq91934 241 1e-58 >seq91934 Length=4437 Score = 241 bits (266), Expect = 1e-58 Identities = 473/692 (68%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 |||||| | ||| |||||||||| ||||| || | ||||||||| || || | || || Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506 Query 13766 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGT 13825 || | | |||||| || |||| ||| || ||||| || |||| || || Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGT 3446 Query 13826 AATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAAAATCAC 13884 || ||||| ||| | | | ||| ||||||||| ||||| ||| |||||||||| Sbjct 3445 TATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAA-CACAGCAAAATCAC 3387 Query 13885 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13944 |||| | ||||| || | | ||| | || || || ||||| | || ||||| | | Sbjct 3386 AATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGAC 3327 Query 13945 CTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGAATATTCCCTCAAC 14002 | ||||| |||| ||||||||| | |||||| || | | ||| ||| || ||||| || Sbjct 3326 CACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAA--GAAAATGCCCTCCAC 3269 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT-TTTTGTTCGATATCCATTTTC 14061 || ||||| || || | ||||| ||||| || ||||| | | ||||| Sbjct 3268 AGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCA-ATCCAAGACA 3210 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 | ||||| || | || |||| | ||| |||||||| |||||||| | ||| | Sbjct 3209 TTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAAT 3150 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 | | || | | |||||| | || || | | ||||||||||||||||||| Sbjct 3149 CGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGTA 3090 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 |||||||| || || || |||||||| || || | || || | |||||| || Sbjct 3089 CATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTT 3030 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 | |||| | ||| | | ||||||||| || |||||||| ||| ||||| || |||| Sbjct 3029 GGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCCA 2970 Query 14302 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361 | | | |||||||| |||| | | | ||||||||| ||| || || ||| | Sbjct 2969 GAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTATCTT 2910 Query 14362 TAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 |||| ||||||||||| || || ||||||||| Sbjct 2909 TAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTT-AGAAATAACGCCCATTTT 13582 || |||||| ||||||| | |||||||||||| | ||| |||| | ||||| | || Sbjct 3813 TAGAAATCAGCATCTAAAGTAAAAACATTATC-TAAACGTTGAGAAGTCACGCCTAACTT 3755 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||||| ||| | ||||||||| || |||||||| |||| || || |||| Sbjct 3754 CTGATATTCACCCACTTTGCGTTCAAAGAAATTGGTTTTACCATCCAAAGAAATCATTTC 3695 Query 13643 CATAAAATCAAATGGATT 13660 |||||| | || ||||| Sbjct 3694 CATAAAGGCGAAGGGATT 3677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478543611534000