Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq91934 212 6e-50 >seq91934 Length=4437 Score = 212 bits (234), Expect = 6e-50 Identities = 473/705 (67%), Gaps = 4/705 (1%) Strand=Plus/Minus Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 ||| | ||| || | |||||| | ||| |||||||||| ||||| || | ||||||||| Sbjct 3580 TTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCAT 3521 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 || || | || || || | | ||||| || |||| ||| || ||||| || Sbjct 3520 GCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTC 3461 Query 13599 GTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658 |||| || | || | ||| ||| | | | ||| ||||||||| ||||| Sbjct 3460 CGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAA 3401 Query 13659 ACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717 ||| |||||||||||||| | ||||| || | | ||| | || || || ||||| | Sbjct 3400 -CACAGCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAA 3342 Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 13777 || ||||| | || ||||| |||| ||||||||| | ||| || || |||| Sbjct 3341 GGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGA 3282 Query 13778 ATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT-TTTTGTTT 13836 | || ||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 3281 AAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGC 3222 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 | ||||| | ||||| || | || |||| | ||| ||||| || ||| Sbjct 3221 CA-ATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCA 3163 Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 || || | || || | || | | |||||| | || || | | |||||| Sbjct 3162 TTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATAC 3103 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||||||||||| ||||| || || || || |||||||| ||||| | || |||| Sbjct 3102 ATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTA 3043 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||||||||| | |||| | ||| | | |||||||| ||||||||||| ||| Sbjct 3042 ACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCA 2983 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 ||||| || |||| | | | |||||||| |||| | | | ||||||||| ||| Sbjct 2982 GCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAG 2923 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 || | ||| ||||| ||||||||||| || || ||||||||| Sbjct 2922 TCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTT-AGAAATAACGCCCATTTT 13370 || |||||| ||||||| | |||||||||||| | ||| |||| | ||||| | || Sbjct 3813 TAGAAATCAGCATCTAAAGTAAAAACATTATC-TAAACGTTGAGAAGTCACGCCTAACTT 3755 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||||| ||| | |||||| || || |||||||| |||| || || |||| Sbjct 3754 CTGATATTCACCCACTTTGCGTTCAAAGAAATTGGTTTTACCATCCAAAGAAATCATTTC 3695 Query 13431 CATAAAATCGAATGGATT 13448 |||||| |||| ||||| Sbjct 3694 CATAAAGGCGAAGGGATT 3677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477407224076400