Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq91934 212 6e-50
>seq91934
Length=4437
Score = 212 bits (234), Expect = 6e-50
Identities = 473/705 (67%), Gaps = 4/705 (1%)
Strand=Plus/Minus
Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538
||| | ||| || | |||||| | ||| |||||||||| ||||| || | |||||||||
Sbjct 3580 TTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCAT 3521
Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598
|| || | || || || | | ||||| || |||| ||| || ||||| ||
Sbjct 3520 GCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTC 3461
Query 13599 GTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658
|||| || | || | ||| ||| | | | ||| ||||||||| |||||
Sbjct 3460 CGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAA 3401
Query 13659 ACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717
||| |||||||||||||| | ||||| || | | ||| | || || || ||||| |
Sbjct 3400 -CACAGCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAA 3342
Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 13777
|| ||||| | || ||||| |||| ||||||||| | ||| || || ||||
Sbjct 3341 GGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGA 3282
Query 13778 ATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT-TTTTGTTT 13836
| || ||||| || || ||||| || || | ||||| ||||| || |||||
Sbjct 3281 AAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGC 3222
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
| ||||| | ||||| || | || |||| | ||| ||||| || |||
Sbjct 3221 CA-ATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCA 3163
Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
|| || | || || | || | | |||||| | || || | | ||||||
Sbjct 3162 TTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATAC 3103
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016
||||||||||||| ||||| || || || || |||||||| ||||| | || ||||
Sbjct 3102 ATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTA 3043
Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
||||||||| | |||| | ||| | | |||||||| ||||||||||| |||
Sbjct 3042 ACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCA 2983
Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136
||||| || |||| | | | |||||||| |||| | | | ||||||||| |||
Sbjct 2982 GCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAG 2923
Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181
|| | ||| ||||| ||||||||||| || || |||||||||
Sbjct 2922 TCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878
Score = 89.7 bits (98), Expect = 5e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTT-AGAAATAACGCCCATTTT 13370
|| |||||| ||||||| | |||||||||||| | ||| |||| | ||||| | ||
Sbjct 3813 TAGAAATCAGCATCTAAAGTAAAAACATTATC-TAAACGTTGAGAAGTCACGCCTAACTT 3755
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
|||||||||| ||| | |||||| || || |||||||| |||| || || ||||
Sbjct 3754 CTGATATTCACCCACTTTGCGTTCAAAGAAATTGGTTTTACCATCCAAAGAAATCATTTC 3695
Query 13431 CATAAAATCGAATGGATT 13448
|||||| |||| |||||
Sbjct 3694 CATAAAGGCGAAGGGATT 3677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477407224076400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |