Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq125840 116 3e-21 seq64788 116 3e-21 >seq125840 Length=3442 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | ||| |||||||| | |||||| |||||| Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||| ||||| || ||||| || |||||||| | || Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 645 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | ||||| | ||| |||||| || |||||| Sbjct 644 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACT 585 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || |||| |||||| || || || ||||| Sbjct 584 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq64788 Length=4825 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | ||| ||||| || | || ||| ||||| | |||||||||||| Sbjct 1589 CCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGAC 1648 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||||||| | || ||||||||||| || || ||||| || ||||||||||| | || Sbjct 1649 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGA 1708 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | | | || || | ||||| Sbjct 1709 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACC 1768 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 1769 TCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | ||| |||||||| | || || ||||| | ||||||||| || Sbjct 1816 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGA 1875 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || |||| ||||||||||| ||||| |||||||| || |||||||| | || Sbjct 1876 CAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGG 1935 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || || |||| || | ||| || ||| || ||| || Sbjct 1936 GATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1995 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | || || ||||| |||||||| Sbjct 1996 CTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | ||| |||||||| | || ||||||||| | |||||||||||| Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1420 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||||||| | || ||||||||||| || || || || || || |||||||| | || Sbjct 1421 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGA 1480 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || || | || || | ||| |||||| | || || Sbjct 1481 ATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACT 1540 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || |||||||| || | || || || ||||| ||||| Sbjct 1541 TCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || ||||| |||| |||| ||||||||| | |||||||||||| Sbjct 164 GCCACCACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGA 223 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| | || ||||| || || ||||| || ||||| || || || || | || Sbjct 224 CAAAGTACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGG 283 Query 43002 CACACCTTCTTTTTCGCTGA 43021 | |||||| || || |||| Sbjct 284 AATACCTTCCTTATC-CTGA 302 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | ||| || ||||| | |||||||||||| Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| || | |||||| ||||||||||| | || |||||||| | || Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 2164 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || || | ||||| | ||| || || | ||||| Sbjct 2165 ATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACC 2224 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 |||| || || || || || |||| || ||||| || |||||||||||| Sbjct 2225 TCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTTC 2275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380451584975580