Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq91934 185 1e-41 >seq91934 Length=4437 Score = 185 bits (204), Expect = 1e-41 Identities = 487/731 (67%), Gaps = 42/731 (6%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| | || || |||||||| || ||||| || ||||| || || || | || | Sbjct 2865 AGGCTGAAGCATCTTTTTGGACTGTAGAAGAAGTAGATCTCTCTAAAGATAATTCGGACT 2924 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 |||| | | | || || | |||||| | ||||| || || || |||||||||||| Sbjct 2925 GGGAAAAAC---TCACCGACAATGAGCGTTACTTTATCTCACATGTTCTGGCCTTCTTTG 2981 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACGATTCTCTCAAGAGTTGACC 125216 | | |||||||| || ||||| || |||| |||||| ||| || || |||||| | || Sbjct 2982 CTGCTTCCGATGGTATTGTCAATGAAAATCTTGTTGA-ACGTTTTTCCCAAGAGGT-ACA 3039 Query 125217 A-TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 | || |||||| || || || || |||||||| || || || || ||||| || Sbjct 3040 AGTTACAGAGGCACGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAATGTACACTCTGA 3099 Query 125276 AATGTACTCTACACTGATTGACATGTACATTCGCGATC-CG--CAACGTAAACACATGCT 125332 |||||| || |||| |||| |||||| |||| || ||||| | | || Sbjct 3100 AATGTATAGTATTTTGATCGACAGCTACATTAAAGATCGCGAACAACGCGATTA---TCT 3156 Query 125333 CTTTAACGCAATCGACACGGTGCCGTCTATACGTAA---AAAGGCTCAATGGG---TGAT 125386 |||||| || || || ||| |||| || | ||| ||||| | |||| || Sbjct 3157 CTTTAATGCCATTGAAACGATGCCAGCTGT---TAAGCGCAAGGCCGATTGGGCAATGTC 3213 Query 125387 TCGG--TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCC 125444 | || ||| || | || | | | || || || | | | ||||| ||||| Sbjct 3214 TTGGATTGGCTCAAAATCGGCCAATTTTGGT-----GAACGCATTATTGCATTTGCCGCT 3268 Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || |||||||| ||||| || |||||||| | || |||||||| ||||| || || Sbjct 3269 GTGGAGGGCATTTTCTTCAGTGGCAGTTTTGCTTCGATATTTTGGCTAAAGAAACGTGGT 3328 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564 || ||||| || || || | || ||||| || ||||| |||||||| |||| ||| Sbjct 3329 CTTATGCCTGGCCTTACATTCTCCAATGAGTTGATTTCTCGTGACGAGGGTTTACATTGT 3388 Query 125565 GACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATG 125622 || ||||| | || ||||| || || | | | || | ||||| || Sbjct 3389 GATTTTGCTGTGTTAATGTTT---AAACATTT--------AATACAACGTCCCAGCCGTG 3437 Query 125623 AAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAAT 125682 | | | | | | || |||| || || || | || ||||||||||| |||||||| Sbjct 3438 AGAGAATAACCGAAATAATAACGGAAGCTGTAAAAATTGAACAAGAGTTCTTAACCGAAG 3497 Query 125683 CCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTG 125742 | | || |||| ||||||||||||| || || | |||| || || || || |||| Sbjct 3498 CTTTGCCCGTCAATTTGATTGGCATGAATTGTAAATTGATGTCGGAATATATTGAATTTG 3557 Query 125743 TGGCAGATCGT 125753 | || |||||| Sbjct 3558 TAGCTGATCGT 3568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739229617467600