Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq64788 150 1e-31 seq125840 120 2e-22 seq177482 98.7 7e-16 seq54036 87.8 1e-12 >seq64788 Length=4825 Score = 150 bits (166), Expect = 1e-31 Identities = 164/216 (76%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CG 15208 ||| || ||||||||||| || || ||||| |||||||||||| | ||| || | Sbjct 1375 TAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGG--ACAATGTACGTCCA 1432 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| |||||| | || ||||||||||| || ||||| |||||||| Sbjct 1433 TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTA 1492 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| ||||||| |||| || || ||| ||| || ||||||||||| Sbjct 1493 TCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATT 1552 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||||| || || || ||||| |||||| Sbjct 1553 GTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCATA 1588 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| | ||| || ||||| | || || ||||||||||| |||||||| Sbjct 1815 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAG 1874 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | | ||||||| |||||||| || ||| | |||||||||||||| || | Sbjct 1875 ACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAG 1934 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | |||||||| ||||| |||||| ||| || ||| |||| || |||||| | || Sbjct 1935 GGATTCCTTCCTTGTCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCGGAAGGCTCA 1993 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| |||||||| || |||| || || ||||| ||||||||| Sbjct 1994 ACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATA 2044 Score = 138 bits (152), Expect = 8e-28 Identities = 165/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CG 15208 ||| || || |||||||| || |||||||| |||||||||||| | ||| || | Sbjct 1603 TAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGG--ACAATGTACGTCCA 1660 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| |||||| | || ||||| ||||| || ||||| ||||||||| Sbjct 1661 TCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 1720 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAA 15326 || ||||| ||| || ||| ||||||||||||| | || ||| || ||||| |||| Sbjct 1721 TCTTGGATTTTAGCT-TTAACATTTTCTATGGTATC-CGATGGTTCGACCTCTAATGTAA 1778 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| || || | ||||| || || |||||||| Sbjct 1779 TTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||||||||| || ||||| || ||||| || || | | | || Sbjct 1148 AACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCC 1207 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || || || ||| | ||||||||||||||||| || || ||||| || || Sbjct 1208 TCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCT 1267 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| ||| |||| |||||||| |||||| || ||||| |||||| Sbjct 1268 TGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTT 1327 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || ||||| |||||| Sbjct 1328 TTTCCAGTCAACGTTTTCACGAAAATCTGCATA 1360 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| |||||||| || || |||||||| |||||||||||| | | | | |||| Sbjct 2059 TAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTC 2118 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| || || | || | ||||||||| || ||||| || || || || Sbjct 2119 TTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATC 2178 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| ||| |||| || ||||| ||| || |||||||| ||||| Sbjct 2179 TTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGT 2238 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || | || || || || |||||||| || || Sbjct 2239 CTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTTCGA 2277 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || ||||| || ||||| || ||||||||| | | | | | ||| Sbjct 180 AATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCT 239 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || || || ||| | ||||||||||| ||||| ||||| ||||| || || Sbjct 240 TCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCC 299 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || ||| |||| ||||| || ||| || || ||||| ||||| Sbjct 300 TGAATTTTAGCT-TTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATGGT 358 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || |||| || || || ||||| |||||| Sbjct 359 TTTGCCAGTCAAGGTCTTAACGAAAATCTGCATA 392 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || || |||||| | ||||||||||| || || ||||| ||||| || Sbjct 9 TCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTA 68 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||| ||| || |||| ||||||||| | ||||| || || || || Sbjct 69 TCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTGATA 128 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||| |||||| || || |||||||| Sbjct 129 GTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163 >seq125840 Length=3442 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | |||||| || ||||| || ||||| ||| | | | | ||||| Sbjct 746 ACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCC 687 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | |||||||||||||| || ||||| ||||||||||| Sbjct 686 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGG 627 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| |||| ||||| ||| | || || || ||||||||||| ||| Sbjct 626 ATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTA 567 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | |||||| || || || ||||| Sbjct 566 CCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq177482 Length=2829 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || |||||||| || ||||| ||| || | | | ||||| ||||| || ||| Sbjct 1623 GTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGCTTTCCA 1564 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | ||||||||||| || || |||||||||||||||||| ||| ||| || Sbjct 1563 GCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 1504 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| |||| || || || ||| || || | || ||||| ||||| ||||| ||| Sbjct 1503 ACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTCAGGGTT 1444 Query 15347 TTTACAAAAATTTGCAT 15363 || || || || ||||| Sbjct 1443 TTGACGAATATCTGCAT 1427 >seq54036 Length=9543 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 91698 GGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCGAACTCGTGCAC 91757 ||| |||||||| |||||| |||||||| |||||||| |||| || || ||||| || Sbjct 1959 GGGGTTGAAATGTGGACCAGCCGATGTGCAGCCGTTAGTATTGTCACCAAATTCGTGAAC 2018 Query 91758 ATGAAAACCGTGTAAACCCTTTGGCAAA 91785 ||| ||||| ||||||||||| | |||| Sbjct 2019 ATGGAAACCATGTAAACCCTTGGACAAA 2046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361307379206910