Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq177482 129 4e-25
seq64788 111 1e-19
>seq177482
Length=2829
Score = 129 bits (142), Expect = 4e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| ||||| |||||||| || |||||||| |||||||| || || | || |
Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCA 1582
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| ||||||||||||||| ||| || ||||||||||| || | || || ||||||||
Sbjct 1581 TCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 1522
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| |||| ||| || ||| || ||||| ||||| || || ||||| ||
Sbjct 1521 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 1462
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || ||||| || ||||| ||||| || ||||||
Sbjct 1461 GTCTTACCCGTCAGGGTTTTGACGAATATCTGCATG 1426
>seq64788
Length=4825
Score = 111 bits (122), Expect = 1e-19
Identities = 156/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|| || |||||||| | || ||||| ||||| || |||||||| ||||| | ||
Sbjct 1373 CGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCA 1432
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||||||| || ||| || ||||||||||| || || | ||| || ||||||||
Sbjct 1433 TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTA 1492
Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| || | ||| ||||| ||| ||| |||||| |||| ||| || | ||
Sbjct 1493 TCTTGAATTTTGGCC---TTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTA 1549
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||||||| || | || || |||||||| |||||
Sbjct 1550 ATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 109 bits (120), Expect = 3e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211
|| || || |||||||||||||| || |||||||||||||||||||||||||| || |
Sbjct 1826 AAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGC 1885
Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271
||| |||||||| || || || || |||||||| || || | || || |||||
Sbjct 1886 CCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCC 1945
Query 33272 TTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| || ||| ||| || ||| ||| || ||| || | ||| |||| ||
Sbjct 1946 TTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTG 2005
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || | || || || || ||||||||
Sbjct 2006 ATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
Score = 104 bits (114), Expect = 1e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| ||||| || | || ||||| ||||| ||||||||||| |||||| | |
Sbjct 177 CGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCA 236
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| ||||| ||||| || || || |||||||||||||| | ||| || ||||| ||
Sbjct 237 TCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTA 296
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| ||| ||| || ||| ||| ||||| |||| ||| |||| || ||
Sbjct 297 TCCTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATG 356
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || || | || || |||||||| |||||
Sbjct 357 GTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391
Score = 98.7 bits (108), Expect = 6e-16
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|| || ||||| || | |||||||||||||| || |||||||| ||||| | ||
Sbjct 1601 CGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCA 1660
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| |||||||| || ||| || |||||||| || || || | ||| || ||||||||
Sbjct 1661 TCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 1720
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | || ||| || ||| || || || |||| || || | ||
Sbjct 1721 TCTTGGATTTTAGC---TTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTA 1777
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| ||||||||||| | ||||| ||||| |||||||||
Sbjct 1778 ATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||||||||||||| | || || || ||||| |||||||| ||||| | || |
Sbjct 1145 CGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCA 1204
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| ||||| ||||| || || || |||||||| ||||| | || || ||||| ||
Sbjct 1205 TCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTA 1264
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || ||| ||| || || |||| || |||| ||
Sbjct 1265 TCTTGGATCTTAGCC---TTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTG 1321
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||||||| || | ||||| |||||||| |||||
Sbjct 1322 ATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318010253503980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |