Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq64788 114 9e-21 seq125840 93.3 3e-14 seq177482 86.0 4e-12 >seq64788 Length=4825 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| || || ||| |||||||| || |||||| ||| ||| |||| Sbjct 1375 TAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATC 1434 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||||||||| || || || || || ||||| || || | || | |||||||||||| Sbjct 1435 TTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATC 1494 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| || || | ||| ||| || | || || || || | |||||||| Sbjct 1495 TTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGT 1554 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || || ||||| || || || ||||| Sbjct 1555 TTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||| | ||| |||||||| | || |||||||| ||||| ||||| Sbjct 1817 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGAC 1876 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| | || ||||||||||| || || || ||||| ||||| || || |||| Sbjct 1877 AATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGG 1936 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| |||||| ||| || | ||| |||||| | ||||| || Sbjct 1937 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACC 1996 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 1997 TCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| ||||| || || || ||||||||| || || |||||| ||| ||| |||| Sbjct 1603 TAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATC 1662 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||||||||| || || || || || || || || || | || | ||||||||| || Sbjct 1663 TTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTC 1722 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||| ||| || | | | ||||| | || || || || | |||||||| Sbjct 1723 TTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGT 1782 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||| || ||||| || || || |||||||||||| Sbjct 1783 TTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || ||| ||| ||||||||||| |||||| || ||| |||| Sbjct 180 AATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCT 239 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || || || || ||||| ||||||||||| | || | |||||| ||||| Sbjct 240 TCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCC 299 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||| || | ||| || || | || || || || | || || ||| Sbjct 300 TGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATGGTT 359 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || ||||| || || || ||||| Sbjct 360 TTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||||||||||| || |||||| || || | || || Sbjct 2063 ACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCA 2122 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || ||||| || | ||||| || || | || | || || |||||| | Sbjct 2123 AGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCTTGA 2182 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| |||||| | || || || || | || || || || Sbjct 2183 ATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTTG 2242 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCA-TGTCGAGTCTTTGTAA 44136 || ||||| |||||||| || ||||||| | ||||| | ||||| Sbjct 2243 CCAGTTAATGTCTTCACGAAGATTTGCATTTTCGAGCGTCTGTAA 2287 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || ||| || ||||| ||||| || || | || |||| Sbjct 1148 AACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCC 1207 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || || || || ||||| ||||| ||||| |||| | |||||| |||||| Sbjct 1208 TCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCT 1267 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||||| | ||| ||||||| || || || || | || || ||| Sbjct 1268 TGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTT 1327 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || ||||| || || ||||| Sbjct 1328 TTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 >seq125840 Length=3442 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| ||| || ||||| ||||| || ||| || || |||| ||| Sbjct 746 ACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCC 687 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| ||||| || || | || | ||||||||| ||| Sbjct 686 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGG 627 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| || || ||||| || || | ||||| || ||| Sbjct 626 ATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTA 567 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| || || || || ||||| Sbjct 566 CCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq177482 Length=2829 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| || ||| | | || |||| |||||||| ||||| ||||| Sbjct 1617 TCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAA 1558 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| |||||||| || | || | |||||||| || ||| || |||||| | Sbjct 1557 ATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTT 1498 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||| || | || || || || | || || || ||||| || | || || || Sbjct 1497 TCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACG 1438 Query 44111 AATATTTGCATGTCG 44125 ||||| |||||| || Sbjct 1437 AATATCTGCATGGCG 1423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353923595991480