Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq64788 116 3e-21 seq125840 91.5 1e-13 seq53560 91.5 1e-13 seq43813 82.4 6e-11 >seq64788 Length=4825 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| | |||||||||||||||||| |||||||| || || ||| Sbjct 1832 AATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCT 1891 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||||||||| || || |||| | | |||||||| || | ||||| ||||| Sbjct 1892 TCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCT 1951 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| ||| || | ||| || |||| ||| || |||| ||| |||||| Sbjct 1952 TGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTT 2011 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || |||||||| |||||||| Sbjct 2012 TTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || |||||||||||||| |||||||||||| || ||| ||||| Sbjct 2063 ACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCA 2122 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| || | |||||||| ||| | ||| || || || | Sbjct 2123 AGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCTTGA 2182 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || ||| ||||| || | ||| ||||| ||| Sbjct 2183 ATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTTG 2242 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || || || || || || || ||||||||||| Sbjct 2243 CCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| || ||||| || ||||| |||||||||||| || || |||| Sbjct 1376 AAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCT 1435 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||||||||| || || | || | | |||||||| ||| | |||||||| || Sbjct 1436 TCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCT 1495 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| || || | ||| || ||| ||||| ||| | |||||| ||| Sbjct 1496 TGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTT 1555 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| || || || ||||| ||||| Sbjct 1556 TTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || ||||| || || || || |||||||| |||||||||||| || || |||| Sbjct 1604 AAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCT 1663 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||||||||| || || |||| | | ||||||||| ||| | ||||||||||| Sbjct 1664 TCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 1723 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||| || | | | | ||| ||||| || | ||||| ||| Sbjct 1724 TGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTT 1783 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || || ||||| || || |||||||| Sbjct 1784 TTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 >seq125840 Length=3442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||||| || ||||| ||||| || ||||| ||| || || | ||||||| Sbjct 746 ACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCC 687 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || | || | | |||||||| ||| | ||||||||||| Sbjct 686 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGG 627 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | ||| ||| || ||||| ||||||||| || Sbjct 626 ATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTA 567 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAA 20214 || || || |||||||| || || ||||| | ||| Sbjct 566 CCAGTTAAAGTTTTGACGAAGATCTGCATCTATAA 532 >seq53560 Length=2468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 23595 GCGTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGA 23654 || |||| |||||| || ||||| ||||||||||| || ||||| | || Sbjct 856 GCATGTTGTTCCCAGGGATCGTCATCCACCTCCCAGTCTTTAAGACCGCCCTGACAGCTG 915 Query 23655 AAACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCT 23714 |||||||| || |||||||| || | ||||| ||||| || || || |||| | | Sbjct 916 AAACATTTTACACTGTCACCAACACCCATATAATAGAAACCAGCCTCGGCCAATTCCGCA 975 Query 23715 GGCTTTTGTTTTAAACTAACCGGCCAATCCACAAAAGTTTTTAAACGT 23762 ||||||||||| | ||| ||||| || ||||| |||| ||||||| Sbjct 976 GGCTTTTGTTTCATACTTCGTGGCCAGTCGACAAATGTTTGTAAACGT 1023 >seq43813 Length=3862 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 23595 GCGTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGA 23654 || |||| ||||||||| ||||| |||||||||||||| || || || Sbjct 1134 GCATGTTGTTCCCACGGATCGTCATCCAAATCCCAGTCTTTGAGACCACCCAAACAGCTG 1193 Query 23655 AAACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCT 23714 |||||| || ||||| || ||| | ||||| ||||| || || || | || |||| Sbjct 1194 AAACATAGTACACTGTCCCCAACGCCCCTATAATAGAAACCAGCCTCGGCCAGTTCCTCT 1253 Query 23715 GGCTTTTGTTTTAAACTAACCGGCCAATCCACAAAAGTTTTTAAACGT 23762 ||||||||||| | ||| ||||| || |||| |||| ||||||| Sbjct 1254 GGCTTTTGTTTCATACTTCGTGGCCAGTCGGCAAATGTTTGTAAACGT 1301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418577189360310