Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq91934 205 8e-48 >seq91934 Length=4437 Score = 205 bits (226), Expect = 8e-48 Identities = 485/723 (67%), Gaps = 10/723 (1%) Strand=Plus/Minus Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027 ||||| | |||||| | ||||| ||||| || || || | ||| || | ||| ||| Sbjct 3582 AATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTC 3523 Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087 || || || || || || |||| |||||| ||||| || | || ||| || | || ||| Sbjct 3522 ATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCT 3463 Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGG-AGGATTTGATAGATGCTTAAACAT 13146 || | | ||| || ||||| | || | ||| | | | | || ||| |||||||| Sbjct 3462 TCCGTTATTATTTCGGTTATT-CTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACAT 3404 Query 13147 CAT-ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATG 13205 | ||| ||||||||||| || || || || || | | || | ||| || || |||| Sbjct 3403 TAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATG 3345 Query 13206 TTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaa 13265 | || || |||||||| || ||||| || | ||||||||| | |||||| || | Sbjct 3344 TAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGA 3285 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATA--CGTACTATTTTT 13323 | || || || || || || ||||| || || | | ||||||| | | | ||||| Sbjct 3284 AGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTG 3225 Query 13324 ACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTA 13382 | | ||||| | ||||| | || || | ||||| || | ||| |||| | Sbjct 3224 A--GCCAATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTG-GCATCGTTTCAA 3168 Query 13383 TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 | || ||||| | ||||| || | | ||| ||| || | || ||||| | | Sbjct 3167 TGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATAC 3108 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 |||||||||| || || | ||||||||| || |||||||||||||| ||||| | |||| Sbjct 3107 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCT 3048 Query 13503 CTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCAC 13562 ||| || || || || | |||| | ||| | | ||||| || || || || || Sbjct 3047 CTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGG 2988 Query 13563 TAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTA 13622 ||||||||| || || || | || ||||| | || || || | | ||| Sbjct 2987 AAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTT 2928 Query 13623 ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAG 13682 ||| || | | |||||| || | |||||| || || || ||||||||||| || ||| Sbjct 2927 CCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAG 2868 Query 13683 CCT 13685 ||| Sbjct 2867 CCT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429944959369020