Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq177482 172 1e-37 seq64788 149 1e-30 seq125840 134 3e-26 seq91934 134 3e-26 >seq177482 Length=2829 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| |||||||| |||||||| ||||| || || || | ||| ||||| | ||| Sbjct 1629 TGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGC 1570 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 |||||||||||||| | | || ||||| || || ||||||||||| ||||||||||| Sbjct 1569 TTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTG 1510 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || || ||||| ||||| || || || |||||||| || Sbjct 1509 GCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTC 1450 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||||||||| Sbjct 1449 AGGGTTTTGACGAATATCTGCAT 1427 >seq64788 Length=4825 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| |||||||||||||| || ||||| || ||||| | || | |||||||| Sbjct 1834 TACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTC 1893 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| || || ||||| | | |||||||| ||||| |||||||| || || || Sbjct 1894 CAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTG 1953 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | |||||| ||| || ||||| | || || || || Sbjct 1954 AATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTT 2013 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || ||||| Sbjct 2014 GCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || || || | ||| | |||||||| |||||||| || Sbjct 2075 GTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCAAGTTGTTTACCG 2134 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||||||||| | |||||||| || || || || || ||||| ||||| || || || Sbjct 2135 GCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCTTGAATTTTAGCCTTG 2194 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||||| || || ||||| ||||| | ||| Sbjct 2195 ACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTTGCCAGTTAATGTC 2254 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || |||||||| Sbjct 2255 TTCACGAAGATTTGCATTTT 2274 Score = 116 bits (128), Expect = 8e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || ||||| |||||||| || || | ||| || || | || || || Sbjct 1163 GTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGCTTACCG 1222 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| || ||||| || ||||| ||||| || ||||| || || Sbjct 1223 GCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTTAGCCTTG 1282 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| ||||||||||| | || || || || ||||| | ||| Sbjct 1283 ACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTTTTTCCAGTCAACGTT 1342 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1343 TTCACGAAAATCTGCAT 1359 Score = 116 bits (128), Expect = 8e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || || || || | || | || ||||| | |||||| ||| Sbjct 1391 GTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGTTTACCA 1450 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| | |||||||| || || || ||||||||||| ||||| || || ||| Sbjct 1451 GCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATTTTGGCCTTT 1510 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| ||||| || |||| ||||| || || || || | || Sbjct 1511 ACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTC 1570 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1571 TTAACGAAAATCTGCAT 1587 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| || || || | ||| | || ||||| | || || || Sbjct 195 GTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCTTCCAACTGCTTACCG 254 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || || || || || || ||||| ||||||||||| || ||||| Sbjct 255 GCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGAATTTTAGCTTTA 314 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || ||||| || || | || || || || ||||| | || Sbjct 315 ACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATGGTTTTGCCAGTCAAGGTC 374 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 375 TTAACGAAAATCTGCAT 391 >seq125840 Length=3442 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | |||||| || ||||| || || ||||| ||||| || | || | ||| ||| Sbjct 749 AGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCT 690 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || || || || | | |||||||| || || || |||||||| || Sbjct 689 TCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCT 630 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || |||||||| | ||| ||| ||| || || || | ||||| ||| Sbjct 629 TGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTC 570 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | ||||| || || |||||||| Sbjct 569 TTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq91934 Length=4437 Score = 134 bits (148), Expect = 3e-26 Identities = 470/722 (65%), Gaps = 30/722 (4%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATA--GA 268809 |||| | || ||||||||||||||||||||||||||||| ||| | || |||| || Sbjct 2865 AGGCTGAAGCATCTTTTTGGACTGTAGAAGAAGTAGATCTCTCTAAAGA--TAATTCGGA 2922 Query 268810 TTGGAAAAATTTAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTG 268868 ||| |||| | | | | || || | ||||| || || |||| || || |||| Sbjct 2923 CTGGGAAAAACTCAC-CGACAATGAGCGTTACTTTATCTCACATGTTCTGGCCTTCTTTG 2981 Query 268869 CAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGA 268928 | | | |||||||| || || |||||||| || || || | ||||||||||| Sbjct 2982 CTGCTTCCGATGGTATTGTCAATGAAAATCTTGTTGAACGTTTTTCCCAAGAGGTACAAG 3041 Query 268929 TTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGA 268988 || | || || | ||||| || || ||||| || || || |||||| | || || || | Sbjct 3042 TTACAGAGGCACGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAATGTACACTCTGAAA 3101 Query 268989 TGTACAGTCTATTAATAGATACTTA---TATAGAT-GATAACAACGAAAAGAAAAGACTA 269044 |||| ||| | || || || | || || |||| | ||||||| | | || Sbjct 3102 TGTATAGTATTTTGATCGACAGCTACATTAAAGATCGCGAACAACGCGATTA----TCTC 3157 Query 269045 TTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG 269104 ||| | | || ||| ||| ||| | || | || ||||| || ||| Sbjct 3158 TTTAATGCCATTGAAACGATGCCAGCTGTTAAGCGCAAGGCCGATTGGGCAATGTCTTGG 3217 Query 269105 AT--AAACGATAGCGCGCC--TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGG 269160 || | | | || ||| || || ||| | | |||| ||||||||||| || || Sbjct 3218 ATTGGCTCAAAATCG-GCCAATTTTGGTGAACGCATTATTGCATTTGCCGCTGTGGAGGG 3276 Query 269161 TATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCC 269220 || ||||| || |||||| | || |||||| | |||||| | || |||||||| Sbjct 3277 CATTTTCTTCAGTGGCAGTTTTGCTTCGATATTTTGGCTAAAGAAACGTGGTCTTATGCC 3336 Query 269221 AGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 || | || ||||| || || ||||| | ||||| |||||||| || || || || Sbjct 3337 TGGCCTTACATTCTCCAATGAGTTGATTTCTCGTGACGAGGGTTTACATTGTGATTTTGC 3396 Query 269281 TTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCA----AGATAGAGTATACG 269336 | ||| | |||| | ||| | |||| | || || || ||| || || Sbjct 3397 TGTGTTAATGTTTA-----AACATTTAATACAA--CGTCCCAGCCGTGAGAGAATAACCG 3449 Query 269337 AAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCG 269396 |||| ||| |||||| | ||| ||| || |||| |||||| | | || Sbjct 3450 AAATAATAACGGAAGCTGTAAAAATTGAACAAGAGTTCTTAACCGAAGCTTTGCCCGTCA 3509 Query 269397 ATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGAT 269456 || | || || |||||| | |||| |||| ||||||||| | || ||| ||||| | | Sbjct 3510 ATTTGATTGGCATGAATTGTAAATTGATGTCGGAATATATTGAATTTGTAGCTGATCGTT 3569 Query 269457 TG 269458 || Sbjct 3570 TG 3571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148484674807080