Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq197411 98.7 1e-15 seq148918 95.1 1e-14 >seq197411 Length=2406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| || || |||||||||||| | | |||||| || || |||||||| Sbjct 592 ATACCGCAAATTGGCGACAAGTTTGCTTCTCGTCACGGTCAAAAGGGTACCTGTGGTATT 533 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 ||||| |||||||||||| | ||||| || ||| ||| || ||| |||||||| Sbjct 532 CAGTATCGCCAAGAAGATATGGCATTTACATGTGAAGGTTTAGCTCCCGATATTATTATT 473 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || ||| ||||| ||| ||||| Sbjct 472 AATCCTCACGCTATTCCATCTCGTATGAC 444 >seq148918 Length=2823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 164446 ATTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGC 164505 || |||||| |||||||||| ||| || |||| || | || || |||| || Sbjct 2226 ATCTTCAGAAGAGCATTTGCATCTCGAGTCTTTCCACCAGAGTTGGTAGAACAATTGGGG 2167 Query 164506 TGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATG 164565 || || || |||| || |||||||| |||| || || ||| |||||||| || ||| Sbjct 2166 TGCAAGCACGTAAAGGGTATTTTATTGTATGGTCCACCCGGTACTGGTAAAACTTTGATG 2107 Query 164566 GCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCT 164622 || || |||| | || | |||||| | || || || |||||||||||||| Sbjct 2106 GCCCGCCAAATTGGT-AATATGTTAAATGCCAGAGAGCCC--AAGATTGTTAATGGTCCA 2050 Query 164623 GAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || | ||| | |||||||| ||||| |||||||| || | ||| |||||| Sbjct 2049 CAAATTTTGGATAAATATGTGGGTGAATCAGAAGCCAACATCAGACGTTTGTTT 1996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594400866516000