Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq112160 122 5e-23 seq20405 118 6e-22 seq116351 116 2e-21 seq164462 113 2e-20 seq136281 113 2e-20 seq118909 113 2e-20 seq28476 111 8e-20 seq65472 104 1e-17 seq162701 89.7 3e-13 seq151231 87.8 9e-13 >seq112160 Length=1628 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||| ||||| ||||||||| |||||||||| ||||||||||||||||| Sbjct 1431 AATTAAACAAAATACAAAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 1373 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 1372 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 1340 >seq20405 Length=2411 Score = 118 bits (130), Expect = 6e-22 Identities = 81/92 (88%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| |||||||| |||||||||| |||||||||| |||||||||||||||||| Sbjct 2197 ATTATCAAAAAATC----TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 2142 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 2141 CACGACGCTCTAACCAACTGAGCTAATGGGCC 2110 >seq116351 Length=1614 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 866 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 925 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 926 ACTGAGCTAATGGGCC 941 >seq164462 Length=2385 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 993 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 934 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 933 TGAGCTAATGGGCC 920 >seq136281 Length=4605 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1720 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1779 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1780 TGAGCTAATGGGCC 1793 >seq118909 Length=2297 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1347 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1406 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1407 TGAGCTAATGGGCC 1420 >seq28476 Length=8292 Score = 111 bits (122), Expect = 8e-20 Identities = 94/112 (84%), Gaps = 7/112 (6%) Strand=Plus/Minus Query 11426 GGGAAATA-TAGA-ATTAATAAAAAATCA--AAT---TGGCCCATGAAAGGATCGAACCT 11478 |||||||| ||| ||| | ||||||| | ||| ||||||||| |||||||||| Sbjct 1393 GGGAAATAATAGTCATTTAAAAAAAATAATCAATGTATGGCCCATGGGGGGATCGAACCC 1334 Query 11479 TCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1333 GCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 1282 Score = 109 bits (120), Expect = 3e-19 Identities = 93/111 (84%), Gaps = 7/111 (6%) Strand=Plus/Minus Query 11426 GGGAAATA-TAGA-ATTAATAAAAAATCA--AAT---TGGCCCATGAAAGGATCGAACCT 11478 |||||||| ||| ||| | ||||||| | ||| ||||||||| |||||||||| Sbjct 1177 GGGAAATAATAGTCATTTAAAAAAAATAATCAATGTATGGCCCATGGGGGGATCGAACCC 1118 Query 11479 TCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1117 GCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1067 >seq65472 Length=1975 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||||| Sbjct 653 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAAC 594 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 593 TGAGCTAATGGGCC 580 >seq162701 Length=2087 Score = 89.7 bits (98), Expect = 3e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 11472 CGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 209 CGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 152 >seq151231 Length=1449 Score = 87.8 bits (96), Expect = 9e-13 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 628 GACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 677 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260861750640760