Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq177482 140 3e-28 seq64788 118 9e-22 seq125840 116 3e-21 >seq177482 Length=2829 Score = 140 bits (154), Expect = 3e-28 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||||||||| || ||||| ||||| | || || ||| | ||||| || Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGG--AAAGTGTGCGAC 1584 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || ||||| |||| || || | |||||||||||| ||||| ||||||| Sbjct 1583 CATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTT 1524 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || || ||||| ||| |||||| | | | ||||| |||| |||| Sbjct 1523 TGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGA 1464 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| || || || || ||||| || || ||||||||| Sbjct 1463 TGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCATG 1426 >seq64788 Length=4825 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | ||| || |||||||| | || |||||| || ||| | | Sbjct 177 CGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCA 236 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || ||| | ||||| || | |||||| ||||| ||||||||||| || Sbjct 237 TCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTA 296 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || || || | | ||||||| | || || || | |||||| Sbjct 297 TCCTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATG 356 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | || || || || |||||||| Sbjct 357 GTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 107 bits (118), Expect = 2e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||||||||| || | || ||||||||||| | || || || | || || || Sbjct 1145 CGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAG--AGAGGGTGCGAC 1202 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||| ||| || ||| | ||||| || | ||| || |||||||| |||||||| | Sbjct 1203 CATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCT 1262 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || |||||||| | | || || | | || || || | |||| Sbjct 1263 TATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGA 1322 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||||| | |||||||| || |||||||| Sbjct 1323 TGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 105 bits (116), Expect = 6e-18 Identities = 173/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || || || | ||| || || ||||| ||||| |||||||| | Sbjct 1797 TTTTAACGAATATTTGCATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTT 1856 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | || ||||| || ||| || |||| ||||| ||| | || || | Sbjct 1857 TTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCA 1916 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||| ||||||||||| || ||||| ||||| | |||||| || || || | | Sbjct 1917 AACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAA 1976 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| || | | || || || | ||||||||||| ||||| | || || ||||||| Sbjct 1977 TAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGA 2036 Query 95001 TCTGCAT 95007 | ||||| Sbjct 2037 TTTGCAT 2043 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || ||||| || | ||||| |||||||| | ||| |||||| || || | Sbjct 1373 CGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCA 1432 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || | |||||||| | ||| |||||||| |||||||||||||| Sbjct 1433 TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTA 1492 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||||| || | | |||||| | | || || || | || || Sbjct 1493 TCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATT 1552 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || | || || || || |||||||| Sbjct 1553 GTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 |||| || | |||||||||||| ||||||||||| || || | ||||| ||||||||| Sbjct 724 AGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACGT 783 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | | ||| |||| | | || || || | ||||| ||||| ||||| | || |||| Sbjct 784 TTTCAATAGTATCAGAGGGTTCAACCTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTCA 843 Query 94995 CAAAGATCTGCAT 95007 ||||||| ||||| Sbjct 844 CAAAGATTTGCAT 856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 |||||||||||| ||||||||||| || || | ||||| ||||||||| | | ||| Sbjct 1009 TTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCAATAGT 1068 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 |||| | | || || || | ||||| ||||| ||||| | || ||||||||||| || Sbjct 1069 ATCAGAGGGTTCAACCTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTCACAAAGATTTG 1128 Query 95005 CAT 95007 ||| Sbjct 1129 CAT 1131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || |||||||| | || || || ||||| | ||| |||||| || || | Sbjct 1601 CGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCA 1660 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || | || ||||| | || |||||||| ||||||||||||||| Sbjct 1661 TCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 1720 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || || | | || || | | ||||| || | || || Sbjct 1721 TCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATT 1780 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||||| || | ||||| || || || ||||||| Sbjct 1781 GTTTTTCCCGTTAATGTTTTAACGAATATTTGCATGC 1817 >seq125840 Length=3442 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || || || ||||||||||| | || || ||| || ||| ||| ||| Sbjct 746 ACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCC 687 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| ||| | ||||| || | ||| |||||||| ||||||||||||||||| | Sbjct 686 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGG 627 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | ||||| | ||||| || | || ||||| || Sbjct 626 ATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTA 567 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | |||||| || ||||||||||| Sbjct 566 CCAGTTAAAGTTTTGACGAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447184425063600