Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13253 178 2e-40 seq72203 118 2e-22 >seq13253 Length=2366 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||| |||||| | | || |||||||||||||| || |||||||||||||| Sbjct 756 CGCTAAACGTTATCGCAAAGTGTTGCGTGATAACATCCAAGGTATTACCAAGCCAGCTAT 697 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||| |||||||||||||||| || || ||| | ||||| ||| | || ||||| | Sbjct 696 TAGACGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCTGGTTTGATTTACGAAGAAAC 637 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || | | | ||||| | ||||||| || |||||| || Sbjct 636 TCGTGGTGTCTTGAAAGTGTTTTTGGAAAATGTTATTCGTGATGCTGTCACCTATACTGA 577 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || || ||||| |||||||| | |||||||| ||||| | ||||| Sbjct 576 ACACGCCAAGAGGAAAACCGTCACTGCCATGGATGTTGTCTATGCTTTGAAGAGACAAGG 517 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 516 ACGTACTTTGTACGGTTTCGGCGGTTAA 489 >seq72203 Length=15676 Score = 118 bits (130), Expect = 2e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | ||||| ||||||||||| || ||||||||||| || || Sbjct 11049 GCCAAGCGCCATCGTAAAGTACTTCGTGATAACATCCAGGGTATCACCAAGCCGGCCATA 11108 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| | || || || |||||||||| | Sbjct 11109 CGTCGTCTAGCCCGTCGTGGTGGTGTGAAGCGTATTTCGGGTTTAATCTATGAAGAAACC 11168 Query 16553 CGTGATGTTTTGAAG 16567 |||| |||||| ||| Sbjct 11169 CGTGGTGTTTTAAAG 11183 Score = 100 bits (110), Expect = 4e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 |||||| | ||||||| | |||||||| || || |||||||| ||||| ||| |||| Sbjct 11261 CGTTATTCGTGATGCTGTTACTTATACCGAACATGCAAAACGTAAAACTGTTACCGCCAT 11320 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||||||| |||||||||||||| |||| | || |||||||| ||||| Sbjct 11321 GGACGTGGTCTATGCTTTGAAACGTCAAGGACGTACTTTGTACGGTTTTGGTGGTTAA 11378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78894615224430