Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq132740 176 9e-40
seq90454 100 6e-17
seq47046 100 6e-17
seq174969 96.9 7e-16
>seq132740
Length=4354
Score = 176 bits (194), Expect = 9e-40
Identities = 292/422 (69%), Gaps = 0/422 (0%)
Strand=Plus/Minus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|| ||||||| ||||| || || ||| | |||||| || ||||| | | |
Sbjct 3555 ACGTGATCATTATAAACGTGACGCATATTTAATTCATCCTGTTTGAACATAATTATCATA 3496
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
||||| || |||| ||||| || || || |||| |||||| |||||||| | || ||
Sbjct 3495 TTTGCGTTGTCTCGAATCAAATGTTTAGGAATTCTTGTATATGTTTGACATAAGTAAAAA 3436
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
||||||| |||| |||||||| || ||| | | | || | || ||||| |||
Sbjct 3435 GAATCAACATTTCTGTGGCGACCCATACAAAAATATGATCGTATATTATTTTGTTTCTCA 3376
Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524
||||||||||| || |||||||| | || ||| || || || |||||| || |||
Sbjct 3375 CAAGCAACATCATCGAATATCATTAGTGAATTATTTTTGGCTTCATCAGGCGGTATAACA 3316
Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCC 7584
|||| || || ||||| || |||| || || || || | ||| | |||
Sbjct 3315 CTCTCATTATCACTAAATGTAAAATATCCCATCCCTGTTATAGGTGCCATGAGTTTTTCC 3256
Query 7585 AGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTC 7644
| | ||||||| |||||||| | || || ||||| || | |||||| |||||||| |
Sbjct 3255 AAGTACTGATATTTTGGTTGATAGAGCGATTTTGAATATAAATATATGTTCTCAAATTTT 3196
Query 7645 AAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGC 7704
| ||| || ||| | |||| ||| |||| | |||| ||||| ||||| || |||||
Sbjct 3195 AGACCATTCGGACTTTCAATGAGACTAAGCATAACATTAGTCTTCCCACAATTAGATGGA 3136
Query 7705 CC 7706
||
Sbjct 3135 CC 3134
>seq90454
Length=1526
Score = 100 bits (110), Expect = 6e-17
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 3922 TTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGACGTAGT 3981
|||||||| ||||||||||| || || | || |||||||||||||| |||||| ||
Sbjct 852 TTATACTTGAAGACTGATGTACTACTACTCACCGATGTCTTTGAAAATTTTAGA--AAGG 909
Query 3982 TGTTTCAAGACA---TACAATTTAGACGCACTACACTTTTATACAGCACCAGGTCTTTCG 4038
| | ||||| | || |||||||| || || | |||||| || ||||| ||
Sbjct 910 T-ATGCAAGAGAATTTATAATTTAGATCCAGCGCATTACTATACAATTCCTGGTCTGTCA 968
Query 4039 AACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAGATG 4098
| ||| |||||||| |||| || | ||||| ||||| ||||||||| ||| |||
Sbjct 969 TGGGATGCCATGTTAAAATATACAAAAATTGAACTGGAACTTATAACTGATCTTGAAATG 1028
Query 4099 CTTCTTTTCATTGAAAAGGGTGTTCGCGGTGG 4130
| ||| ||| | |||| |||| |||||
Sbjct 1029 TATAATTTTATTAAGCGGGGTATTCGAGGTGG 1060
>seq47046
Length=4595
Score = 100 bits (110), Expect = 6e-17
Identities = 163/227 (72%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531
||||| || | ||||| ||| ||||||||||||| ||||||||||| | ||||| |
Sbjct 3594 ATAAATATGAGTATGTAATTTACTATAAAAATTTACAACAATGTTTAAAACATGGTTT-G 3652
Query 4532 TTCTTAAG-AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCT-CA-AATCAT 4588
||||| |||||||| | | | || |||||| | ||||| | ||||| || || ||
Sbjct 3653 AAGTTAAGTAAAATACATCGAATTTTAAAATTTAAACAATCCAATTGGCTACAGAAGTAT 3712
Query 4589 ATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTT 4648
|| || | || | |||| || || | || || || ||| |||||||| || |
Sbjct 3713 ATTTCATTGAATAATTTGCATAG-GACAAAT-GCAAAAAACACGTTTGAAAAAAATTTCT 3770
Query 4649 ATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTA 4695
||||||| | ||||||||||||| || || || ||||| || |||
Sbjct 3771 TTAAATTATTAAATAATGCGGTTTACGGTAAAACAATGGAAAACGTA 3817
>seq174969
Length=2341
Score = 96.9 bits (106), Expect = 7e-16
Identities = 150/212 (71%), Gaps = 7/212 (3%)
Strand=Plus/Minus
Query 3922 TTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGACGTAGT 3981
|||||||| ||||||||||| || || | || |||||||||||||| |||||| ||
Sbjct 1352 TTATACTTGAAGACTGATGTACTACTACTCACCGATGTCTTTGAAAATTTTAGA--AAG- 1296
Query 3982 TGTTTCAAGACA---TACAATTTAGACGCACTACACTTTTATACAGCACCAGGTCTTTCG 4038
|| | ||| | || |||||||| || || | |||||| || ||||| ||
Sbjct 1295 -GTATGCAGAGAATTTATAATTTAGATCCAGCGCATTACTATACAATTCCTGGTCTGTCA 1237
Query 4039 AACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAGATG 4098
| ||| |||||||| |||| || | ||||| |||| ||||||||| ||| |||
Sbjct 1236 TGGGATGCCATGTTAAAATATACAAAAATTGAACTGAAACTTATAACTGATCTTGAAATG 1177
Query 4099 CTTCTTTTCATTGAAAAGGGTGTTCGCGGTGG 4130
| | ||| ||| | |||| |||| |||||
Sbjct 1176 CATAATTTTATTAAGCGGGGTATTCGAGGTGG 1145
Score = 91.5 bits (100), Expect = 3e-14
Identities = 306/469 (65%), Gaps = 32/469 (7%)
Strand=Plus/Minus
Query 4464 TCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTT 4523
||||| |||||| ||| ||| | || || ||||||| || |||||||||| ||
Sbjct 817 TCTGTCTAATAAAACTAAATATATAATACATTATAAAACGTTAGAACAATGTTTGAATAA 758
Query 4524 AGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGA----CTGGC 4579
|| |||||| | | ||| | || | | | | ||||| || |||| ||||
Sbjct 757 TGGATTAGTTTTAGAAAAAGTTCATCGAATTCTCCAATTT----AAACAGAAGCTCTGGT 702
Query 4580 TCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaa 4639
| || |||| || ||| ||||| | || ||| | ||| | ||| || ||||
Sbjct 701 TGAAGACATACATTGATTTGAATACTGAATATAGAACAAGAGCAACTAATTCATTTGAAA 642
Query 4640 aaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAA 4699
|| | |||||||||||| | |||||||| || | |||||||| ||||| ||||| |
Sbjct 641 AAGATTTTTATAAATTACTTAATAATGCAGTATACGGAAAGACTATGGAAAATGTTGATA 582
Query 4700 AATATAAAGATATATATTTAAGAACAAAGTGG---CAAAGTCAAT----ACAATGTA--- 4749
|| |||||| || ||| ||| | ||| | |||| ||| | || ||
Sbjct 581 AAAGGAAAGATGTACGTTTGGTAACTGAATGGGATCGAAGT-AATCGTAATCATTTAGGA 523
Query 4750 -TCGG--ATTTAGTATGTAGACCAAACTTCCACAGCCTT--ACAATTTTTGATGAGGATA 4804
| || || |||||| | |||||| || || ||| || ||||||| | | ||
Sbjct 522 GTAGGAAATCTAGTATCAAAACCAAATTTTCATAGCATTTCACAATTTACCAATACATTA 463
Query 4805 TGG---TTATAGTTGAACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAG 4861
||| || | |||| |||| ||| || | || |||| ||||| ||| |||
Sbjct 462 TGGGCTATACAAATGAA---TAAAACCCTAACGTATTATT--ACAAACCGATTTATTTAG 408
Query 4862 GGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCATTA 4910
||||| || | |||| ||||||||| | || ||||| ||||||||
Sbjct 407 GGTTTTGTGTTCTAGAGTTATCTAAATGGAAAATGTATGATTTTCATTA 359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97744607780540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |