Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq132740 176 9e-40 seq90454 100 6e-17 seq47046 100 6e-17 seq174969 96.9 7e-16 >seq132740 Length=4354 Score = 176 bits (194), Expect = 9e-40 Identities = 292/422 (69%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 || ||||||| ||||| || || ||| | |||||| || ||||| | | | Sbjct 3555 ACGTGATCATTATAAACGTGACGCATATTTAATTCATCCTGTTTGAACATAATTATCATA 3496 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||| || |||| ||||| || || || |||| |||||| |||||||| | || || Sbjct 3495 TTTGCGTTGTCTCGAATCAAATGTTTAGGAATTCTTGTATATGTTTGACATAAGTAAAAA 3436 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||||||| |||| |||||||| || ||| | | | || | || ||||| ||| Sbjct 3435 GAATCAACATTTCTGTGGCGACCCATACAAAAATATGATCGTATATTATTTTGTTTCTCA 3376 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524 ||||||||||| || |||||||| | || ||| || || || |||||| || ||| Sbjct 3375 CAAGCAACATCATCGAATATCATTAGTGAATTATTTTTGGCTTCATCAGGCGGTATAACA 3316 Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCC 7584 |||| || || ||||| || |||| || || || || | ||| | ||| Sbjct 3315 CTCTCATTATCACTAAATGTAAAATATCCCATCCCTGTTATAGGTGCCATGAGTTTTTCC 3256 Query 7585 AGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTC 7644 | | ||||||| |||||||| | || || ||||| || | |||||| |||||||| | Sbjct 3255 AAGTACTGATATTTTGGTTGATAGAGCGATTTTGAATATAAATATATGTTCTCAAATTTT 3196 Query 7645 AAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGC 7704 | ||| || ||| | |||| ||| |||| | |||| ||||| ||||| || ||||| Sbjct 3195 AGACCATTCGGACTTTCAATGAGACTAAGCATAACATTAGTCTTCCCACAATTAGATGGA 3136 Query 7705 CC 7706 || Sbjct 3135 CC 3134 >seq90454 Length=1526 Score = 100 bits (110), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 3922 TTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGACGTAGT 3981 |||||||| ||||||||||| || || | || |||||||||||||| |||||| || Sbjct 852 TTATACTTGAAGACTGATGTACTACTACTCACCGATGTCTTTGAAAATTTTAGA--AAGG 909 Query 3982 TGTTTCAAGACA---TACAATTTAGACGCACTACACTTTTATACAGCACCAGGTCTTTCG 4038 | | ||||| | || |||||||| || || | |||||| || ||||| || Sbjct 910 T-ATGCAAGAGAATTTATAATTTAGATCCAGCGCATTACTATACAATTCCTGGTCTGTCA 968 Query 4039 AACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAGATG 4098 | ||| |||||||| |||| || | ||||| ||||| ||||||||| ||| ||| Sbjct 969 TGGGATGCCATGTTAAAATATACAAAAATTGAACTGGAACTTATAACTGATCTTGAAATG 1028 Query 4099 CTTCTTTTCATTGAAAAGGGTGTTCGCGGTGG 4130 | ||| ||| | |||| |||| ||||| Sbjct 1029 TATAATTTTATTAAGCGGGGTATTCGAGGTGG 1060 >seq47046 Length=4595 Score = 100 bits (110), Expect = 6e-17 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531 ||||| || | ||||| ||| ||||||||||||| ||||||||||| | ||||| | Sbjct 3594 ATAAATATGAGTATGTAATTTACTATAAAAATTTACAACAATGTTTAAAACATGGTTT-G 3652 Query 4532 TTCTTAAG-AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCT-CA-AATCAT 4588 ||||| |||||||| | | | || |||||| | ||||| | ||||| || || || Sbjct 3653 AAGTTAAGTAAAATACATCGAATTTTAAAATTTAAACAATCCAATTGGCTACAGAAGTAT 3712 Query 4589 ATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTT 4648 || || | || | |||| || || | || || || ||| |||||||| || | Sbjct 3713 ATTTCATTGAATAATTTGCATAG-GACAAAT-GCAAAAAACACGTTTGAAAAAAATTTCT 3770 Query 4649 ATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTA 4695 ||||||| | ||||||||||||| || || || ||||| || ||| Sbjct 3771 TTAAATTATTAAATAATGCGGTTTACGGTAAAACAATGGAAAACGTA 3817 >seq174969 Length=2341 Score = 96.9 bits (106), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 3922 TTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGACGTAGT 3981 |||||||| ||||||||||| || || | || |||||||||||||| |||||| || Sbjct 1352 TTATACTTGAAGACTGATGTACTACTACTCACCGATGTCTTTGAAAATTTTAGA--AAG- 1296 Query 3982 TGTTTCAAGACA---TACAATTTAGACGCACTACACTTTTATACAGCACCAGGTCTTTCG 4038 || | ||| | || |||||||| || || | |||||| || ||||| || Sbjct 1295 -GTATGCAGAGAATTTATAATTTAGATCCAGCGCATTACTATACAATTCCTGGTCTGTCA 1237 Query 4039 AACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAGATG 4098 | ||| |||||||| |||| || | ||||| |||| ||||||||| ||| ||| Sbjct 1236 TGGGATGCCATGTTAAAATATACAAAAATTGAACTGAAACTTATAACTGATCTTGAAATG 1177 Query 4099 CTTCTTTTCATTGAAAAGGGTGTTCGCGGTGG 4130 | | ||| ||| | |||| |||| ||||| Sbjct 1176 CATAATTTTATTAAGCGGGGTATTCGAGGTGG 1145 Score = 91.5 bits (100), Expect = 3e-14 Identities = 306/469 (65%), Gaps = 32/469 (7%) Strand=Plus/Minus Query 4464 TCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTT 4523 ||||| |||||| ||| ||| | || || ||||||| || |||||||||| || Sbjct 817 TCTGTCTAATAAAACTAAATATATAATACATTATAAAACGTTAGAACAATGTTTGAATAA 758 Query 4524 AGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGA----CTGGC 4579 || |||||| | | ||| | || | | | | ||||| || |||| |||| Sbjct 757 TGGATTAGTTTTAGAAAAAGTTCATCGAATTCTCCAATTT----AAACAGAAGCTCTGGT 702 Query 4580 TCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaa 4639 | || |||| || ||| ||||| | || ||| | ||| | ||| || |||| Sbjct 701 TGAAGACATACATTGATTTGAATACTGAATATAGAACAAGAGCAACTAATTCATTTGAAA 642 Query 4640 aaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAA 4699 || | |||||||||||| | |||||||| || | |||||||| ||||| ||||| | Sbjct 641 AAGATTTTTATAAATTACTTAATAATGCAGTATACGGAAAGACTATGGAAAATGTTGATA 582 Query 4700 AATATAAAGATATATATTTAAGAACAAAGTGG---CAAAGTCAAT----ACAATGTA--- 4749 || |||||| || ||| ||| | ||| | |||| ||| | || || Sbjct 581 AAAGGAAAGATGTACGTTTGGTAACTGAATGGGATCGAAGT-AATCGTAATCATTTAGGA 523 Query 4750 -TCGG--ATTTAGTATGTAGACCAAACTTCCACAGCCTT--ACAATTTTTGATGAGGATA 4804 | || || |||||| | |||||| || || ||| || ||||||| | | || Sbjct 522 GTAGGAAATCTAGTATCAAAACCAAATTTTCATAGCATTTCACAATTTACCAATACATTA 463 Query 4805 TGG---TTATAGTTGAACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAG 4861 ||| || | |||| |||| ||| || | || |||| ||||| ||| ||| Sbjct 462 TGGGCTATACAAATGAA---TAAAACCCTAACGTATTATT--ACAAACCGATTTATTTAG 408 Query 4862 GGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCATTA 4910 ||||| || | |||| ||||||||| | || ||||| |||||||| Sbjct 407 GGTTTTGTGTTCTAGAGTTATCTAAATGGAAAATGTATGATTTTCATTA 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97744607780540