Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq91934 219 4e-52 >seq91934 Length=4437 Score = 219 bits (242), Expect = 4e-52 Identities = 473/703 (67%), Gaps = 14/703 (2%) Strand=Plus/Minus Query 21301 TAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 ||| || | ||| ||||||||||| ||||||| |||| |||| ||||||||| || || Sbjct 3574 TAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAAT 3515 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 ||| || || || | ||||| || || || || ||| || || ||||| || Sbjct 3514 CAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTAT 3455 Query 21421 TATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA-ACATG 21479 ||| | |||| || || || | | | ||| ||||||||||| || ||| | Sbjct 3454 TATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAACACA-G 3396 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 ||||||||||||| ||||| || || | | || || ||||| || ||||| | || | Sbjct 3395 CAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAG 3336 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAAT 21597 |||| | || | || |||| ||||||||| || ||||| ||| ||||| |||||| Sbjct 3335 GCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAA--GAAAAT 3278 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAAT-CGTTCACC---GTATGTAGATTCTTTATCCA 21653 |||||| || || |||||||||| |||| |||||||| | | |||| || | ||| Sbjct 3277 GCCCTCCACAGCGGCAAATGCAA-TAATGCGTTCACCAAAATTGGCCGATT-TTGAGCCA 3220 Query 21654 ATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTT 21713 ||||| |||||| | ||||| |||| | || || ||||| || | Sbjct 3219 --ATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCAT 3162 Query 21714 TTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACA 21773 | || |||| || || || ||| | ||| |||||||| Sbjct 3161 TAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACA 3102 Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833 ||||||| |||| |||||| || || || || || || || ||||| | |||||||| | Sbjct 3101 TTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAA 3042 Query 21834 ATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||| ||||| |||| |||| | | | |||||||| || || ||||| || | Sbjct 3041 CTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAG 2982 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 |||| || |||| | || | ||||| || || || || || || | ||||| ||| | Sbjct 2981 CAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGT 2922 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | | |||||| || | |||||||||||| |||||||| Sbjct 2921 CCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAA 2879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530587603412400