Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq41982 529 2e-145 seq91934 298 7e-76 seq39385 93.3 5e-14 >seq41982 Length=5201 Score = 529 bits (586), Expect = 2e-145 Identities = 1496/2277 (66%), Gaps = 28/2277 (1%) Strand=Plus/Minus Query 61984 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 |||| |||| || ||||| || | | | ||| ||||| || | | ||| ||||| | Sbjct 3365 CCTTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGC 3306 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || |||| || |||| | || ||||| || || | ||| || | | Sbjct 3305 CGGTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGG 3246 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 | || || | ||| ||||| | || ||||||||||||||||| || || | || || | Sbjct 3245 GTTCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTG 3186 Query 62164 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 62222 |||||| || | ||||| | ||| ||||||| || ||||| | || | |||| Sbjct 3185 CCATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACG-AATA 3127 Query 62223 TCTTCTGGAAGGTT-TGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 |||| |||| | | ||| || || || || | || | ||||| || || || Sbjct 3126 TCTTTGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTC 3067 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || || |||| ||||| | | || |||||| || | || | ||| |||| || | Sbjct 3066 ATTTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATA 3007 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 | |||||||| || | || | | || |||||||| |||||| || || | || Sbjct 3006 TTGAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGAT 2947 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 |||||||| ||||| ||||| || || || ||||| |||||||| |||| | ||| | Sbjct 2946 TCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAA 2887 Query 62460 TTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62518 |||| | ||| | |||| ||||||| ||||| | | ||| ||||| | ||| | Sbjct 2886 TTTCGTACACCATGCTGTT-TGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGT 2828 Query 62519 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62578 || |||||| || || ||||| | | || ||| Sbjct 2827 AGGAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATA 2768 Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638 || || || || ||| ||| || | | ||||||||| || || ||||| || ||||| Sbjct 2767 AGTTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATA 2708 Query 62639 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698 ||| |||||||| || | | ||||| || | ||| || | || || Sbjct 2707 AATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGGGGAAACG 2648 Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758 | | ||| || | ||| || | || || ||||| || || ||||| | ||| | Sbjct 2647 CATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAG 2588 Query 62759 ATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 |||||| |||| || || || | ||||||| | ||||| ||||| ||||| |||||| Sbjct 2587 ATTAGA--TTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGA 2530 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA-- 62874 ||| || ||| ||||| |||| || | ||| ||| || ||| || Sbjct 2529 TTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGC 2470 Query 62875 -TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 | |||||||| || | ||| | || |||| |||||| ||||||| ||||| | | Sbjct 2469 GTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTGCG 2410 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | ||| | || || || || || | ||||| ||||| ||||| || | |||||| || Sbjct 2409 GAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGG 2350 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 |||||||| ||||| |||||||| || | ||| | |||||||| ||||| | ||| Sbjct 2349 TTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGA 2290 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTC 63112 | ||| || || || ||| | | | ||||| | || | |||| | |||| Sbjct 2289 GCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGCCTTCA 2230 Query 63113 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 | |||| || ||||||||| |||||| || | |||||||| | | || ||||| Sbjct 2229 T-TTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGG 2171 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63232 ||||| | |||||||| |||||||| ||||| | || | |||| ||||||||| | Sbjct 2170 ACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAA 2111 Query 63233 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291 ||| || ||||| || || ||| ||||||||||| | ||| || || || || || |||| Sbjct 2110 ATCGGGTATCCACAGGGC-ATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTAT 2052 Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351 | || || | ||| | || | | |||||| |||||||| || ||||| || ||||| | Sbjct 2051 TTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAA 1992 Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 |||| || |||||| || || ||||||| || | || || ||| | || | Sbjct 1991 ATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCC 1932 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 | | ||| || | | || ||||| | || || ||||| ||| | | || ||| Sbjct 1931 TAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGG 1872 Query 63472 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529 | | || | | | || || || || || || || ||| || || | ||||| Sbjct 1871 CCCTTATGCAGTGCACGTTAAT--GCCAATACCACCAGCAGATTTGGAAATCATGGCGCA 1814 Query 63530 TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589 | ||| | | | | ||||| || || |||| | | |||| | | || || || Sbjct 1813 TTGTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCA 1754 Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 |||| ||| | || || | ||| ||| || || || || || || ||||| Sbjct 1753 CGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAA 1694 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 | ||||| | | || || || || || || || ||||| || | ||| || Sbjct 1693 ATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTAT 1634 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 |||| || || | ||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct 1633 ACCTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTT 1574 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63829 || ||| |||||| | |||| || || || |||||||| ||||| |||||| || || Sbjct 1573 CAGCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCACGATC 1514 Query 63830 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT 63889 |||||||| ||| || | || || || | || | || | |||||||| Sbjct 1513 ATAAATAATGGACGAATTCAAACGTTCTGCATTCTTCTGCACCACAT-TGTAGTGATACT 1455 Query 63890 -TGAAATAATCGGAGAA-TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 63947 ||||| || || ||| | || ||| | | | | |||||||| | | | ||| Sbjct 1454 CCGAAATCATGGGCGAAGTTTTACCCGTCTCTTTG-TTAACATAATGATACAGATCACTT 1396 Query 63948 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 64007 || || || ||||| |||||| ||||||||||| | ||| || ||||| || | || Sbjct 1395 ATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGGCAATACGAGCC 1336 Query 64008 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 64067 || | ||||||||||| ||| | ||| || | || || ||| | |||||||||| | Sbjct 1335 GCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCTCGGCTGCCAAA 1276 Query 64068 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATT 64127 ||||||| ||| ||||| || ||| |||| || | ||||| |||| | || Sbjct 1275 TTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTGATAACTTTCAGTGTAATG 1216 Query 64128 TTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTG 64187 | || || | | |||| | ||||| ||||| || | ||| ||||||||| || Sbjct 1215 GCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAATACGAGATGTA 1156 Query 64188 ATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64243 |||||||| || ||| || | || ||| |||| |||||||| ||||||| ||| Sbjct 1155 ATTTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAAACAATTT 1100 >seq91934 Length=4437 Score = 298 bits (330), Expect = 7e-76 Identities = 513/733 (70%), Gaps = 29/733 (4%) Strand=Plus/Minus Query 33119 CCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 |||||||| | ||| | ||| || || ||||| |||||| ||||| || ||||| Sbjct 3584 CCAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAAT 3525 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| || || | || || || | ||| | || | || ||||||||||| ||| | Sbjct 3524 TCATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAG 3465 Query 33239 CATCTGTTATAATAGATCTAACGGTT--TCT-TCAC---TCGGTGGATGCAATAAATGTT 33292 | || ||||| || ||||| ||| |||| | || | || | |||||||| Sbjct 3464 CTTCCGTTATTATTT------CGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTT 3411 Query 33293 TAAACATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 ||||||| || ||| || ||||| || || | ||||||||| | | ||| | || ||| Sbjct 3410 TAAACATTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTG 3352 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || || || || ||||| || ||||| || || ||||||||||| ||||| || Sbjct 3351 GAGAATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTG 3292 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC- 33470 ||| ||||| || || || || || ||||| ||||||| | || ||| || ||| Sbjct 3291 CCACTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCC 3232 Query 33471 GCTGTCATGT--ATCCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525 | | | | ||||| | || |||||||||||||| || ||| |||||| Sbjct 3231 GATTTTGAGCCAATCCAAGACATT---GCCCAATCGGCCTTGCGCTTAACAGCTGGCATC 3175 Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 ||||| ||||||||||||||||| | || | | |||||||| || | |||||| Sbjct 3174 GTTTCAATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATC 3115 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645 |||| |||||||||||| || || | ||||| ||||| || || || || |||||||| Sbjct 3114 AAAATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAG 3055 Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705 | ||||| |||| ||||| ||| |||| ||||| | | ||||||||| || || Sbjct 3054 CGTGCCTCTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATA 2995 Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGT 33762 || || || ||||| || |||| |||||| ||||| || | | ||| ||| Sbjct 2994 CCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTC-GGT 2936 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | ||||| | ||| || |||||||||| | |||||||||||| || |||||||| Sbjct 2935 G--AGTTTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878 Query 33823 GATGCCTCTGCCT 33835 ||||| || |||| Sbjct 2877 GATGCTTCAGCCT 2865 >seq39385 Length=6125 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 28461 AATACCCAATTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 28520 ||| |||| |||||||| || |||| |||||||| ||||| || || || || | ||| Sbjct 2557 AATGCCCAGCTCTTTGACTTGGGTTAAAGATCTCCAGTCCATATTTGCACTGCCCAGATA 2616 Query 28521 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28569 ||| ||| |||| || || |||||||||||||| || | ||| |||||| Sbjct 2617 AATGTGTTTATTGTCCGAAATCCAAAATTTTGTGTGTAAAACACCTCCT 2665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621409221231600