Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq41982 138 1e-27 seq64788 100 3e-16 seq125840 95.1 1e-14 >seq41982 Length=5201 Score = 138 bits (152), Expect = 1e-27 Identities = 917/1440 (64%), Gaps = 63/1440 (4%) Strand=Plus/Minus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||| || ||||| || | |||||||| ||||| || |||||||| |||||||| || || Sbjct 3358 CACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGCCGGTCTT 3299 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATAG--GTTGGATTG 147230 ||| || || ||| | |||| ||||| || | || |||| | ||||| || Sbjct 3298 TAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAA---TTTACCGTAGTTGGGTTC 3242 Query 147231 -GCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289 |||||| | ||||| ||| || || ||||||||| ||| || || || || ||||| Sbjct 3241 AGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTGCCAT 3182 Query 147290 GTCCAACACTACTTTTTGTTTAATT-TCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGT 147348 | || | | | || || | |||||| | ||||| | || | |||| | Sbjct 3181 TTG-AATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACGAATATCTT 3123 Query 147349 GTGGAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATT---TTTATCATGA 147405 ||||||||||| || ||||| ||| ||| || ||||||| ||| |||| Sbjct 3122 TGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTCATTT 3063 Query 147406 TATCTGTCGA-ATAT-ACGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGACCAC 147463 || | | | || ||||| || | |||| | | ||| |||||||| | Sbjct 3062 CGTCATCCCATAGATCACGTTCA-GTTAAATCTTTTAGCAA----ATGATGATTGACAAT 3008 Query 147464 -TTGATACTCGCCCGACAGAACTCTTC--GTACGTACAAATTACTAGTAAACGGCTCGAA 147520 |||| | || ||||| || || | || ||| || | ||| ||| | ||||| || Sbjct 3007 ATTGA-ATTCTCCCGATAGCACACGTCTGGTA--TAAATATTGGAGGTATAAGGCTCAAA 2951 Query 147521 CGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAA 147580 || || || || || | || ||||| || | || || ||||| || | | || Sbjct 2950 TGATTCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAA 2891 Query 147581 TGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTA-AGCTCGTCCCAGTTCCAAAGAT 147639 ||||| |||| || ||| |||| || ||| | ||| ||||||||| | || Sbjct 2890 AGAATTTCGTACACCATGCTGTTTGATTT-TCTCTTTCAACTCTGTCCAGTTCCACAAAT 2832 Query 147640 CATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTC 147699 | | | ||| ||||||||| ||| | |||| | || |||| | |||| | Sbjct 2831 CGGTAGGA--GTTT-TATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGC 2775 Query 147700 CATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGC 147757 | |||| || || | || || || | | ||| ||| ||| | ||| Sbjct 2774 CGGGATAAGTTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAG--CTTCCAATGC 2717 Query 147758 ACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTA 147817 ||||||||||||||||| |||| | || |||||| |||| || ||| ||||| Sbjct 2716 GCCATAATAAATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTA 2657 Query 147818 GGGCATATCCA---AAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGG 147874 ||| | | || |||| || || || ||||| || || | ||| || || || || Sbjct 2656 GGGGAAACGCATTAAAATC---AATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGG 2600 Query 147875 TCGGTGTCTGAAATTCGATG-CTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAA 147933 || || | | ||| ||| | || | | || | |||||||| || | ||| || | Sbjct 2599 ACGATGACGTAGATTAGATTTCCTGGCCTCCGGCAGA-GGATAAAAGTTAATGTCTATGA 2541 Query 147934 TTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCGAA-G 147992 |||| |||||||| ||||||| ||| ||| ||||| | | |||||||||||| | Sbjct 2540 TTTTGTTGAGATTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATG 2481 Query 147993 CTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCC 148052 |||| | | | |||| |||| | ||| || |||||||| ||||||||||| Sbjct 2480 TTTTTTCAGGCGTCA----CAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCT 2425 Query 148053 GTTTC-TCGATTGTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCAC 148111 | || ||| || || ||| | || ||||| | ||||| || ||| ||| Sbjct 2424 ATCTCATCGGGTG-CGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGT 2366 Query 148112 TCCCTCGtttttttGATTATTTTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGC 148171 || |||| || ||| | ||| ||| | ||| || ||| |||||| |||| Sbjct 2365 GCCAATATTTTGCTGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGT 2306 Query 148172 TCCGGTCTCGACTTGAGTCTCAATAATTTTTCTATGAAGATCTAAAGCC--GAAATT--T 148227 || || || ||||||| ||||| || |||| | ||| || | Sbjct 2305 ACCTGTTTCTACTTGAGCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACG 2246 Query 148228 GTTTTTTAAACTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCAT 148287 |||| | |||||||| || || || || | || |||||||| || Sbjct 2245 GTTTGCT----TTGCCTTCATTTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCC 2190 Query 148288 AGCAATCGTTTAAACCGGGACACTCGTCGGGGCACATCAATGACC-ATTTCCCTCCTGTC 148346 | || | | ||| ||||| | || ||| ||||| || |||| || ||| | | || Sbjct 2189 AAACTTCCTGCAGACCAGGACATTTGTGGGGACACATTAACGACCAATCTCCAT--TTTC 2132 Query 148347 TT-TACCCTCTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTT 148405 || ||| || |||||||||| ||| ||| |||||| |||| | | ||||| | ||| | Sbjct 2131 TTCTACTCTTTTCATAAACAAATCGGGTATCCACAGGGCATAGAATAGATCTCTAGCTCT 2072 Query 148406 CATATCCTCGGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCA 148465 || || || |||| ||||| ||||||||| ||||| |||| ||||| Sbjct 2071 GTGCTCTTCCTTGCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCA 2012 Query 148466 AGGCTCGATGTATACGGTCATGGCGCCTTTCCTTTT---ACCTCCTTGATCGACATGGCG 148522 |||||| | || | || | || ||| | ||| || |||||||| |||| ||| Sbjct 2011 AGGCTCCAAATAAATGGCAAATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCG 1952 >seq64788 Length=4825 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | || || || ||||||||||| || | |||||| | || | ||| || Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || || || | ||||| || ||| || || || || || || || ||| Sbjct 2214 TCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGAT 2155 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || |||| | ||| |||||||| ||||| | | | | ||| || Sbjct 2154 CAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTAC 2095 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||||||||||||| | ||| |||| || Sbjct 2094 AACATTCAAAAAGAATCTACTCTTCATTTGGTTCT 2060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||||| ||||| ||| | |||||| | || | || | | Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| || ||| ||||| ||||| || ||||| |||||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 1924 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| || ||| |||||| | ||||| | | | | || || || Sbjct 1923 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 1864 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 || |||||||||||||| | ||| |||| Sbjct 1863 ATACAAAAAGAATCTACATTGCATTTGGT 1835 >seq125840 Length=3442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||||||| || | || ||| | ||| | || | || Sbjct 538 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGCCTTAC 597 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| || || ||||||||||| || || || |||||| Sbjct 598 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 657 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || ||| |||||| | ||||||| | | | | | |||||| || Sbjct 658 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAT 717 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| || | ||| |||| || Sbjct 718 ATCCAAAAGGAATCCACCTTACATTTGGTACT 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477480642367200