Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq41982 206 7e-48 seq91934 120 8e-22 >seq41982 Length=5201 Score = 206 bits (228), Expect = 7e-48 Identities = 608/929 (65%), Gaps = 15/929 (2%) Strand=Plus/Plus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGT 363446 |||||| |||| ||||| |||||| |||||| | || |||||| | ||||| Sbjct 1535 TATTTT-GGATTCAAGACACTGGAGAGATCCTATTTGCTGAAAATGAATGGTAAGATTGT 1593 Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 |||| | || ||||||||||||||| | || ||||| ||||| ||| | || | || Sbjct 1594 TGAAAGACCACAGCATATGTTAATGAGAGTAGCTATAGGTATACATGGAGATGACATAGA 1653 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566 | | || || ||||| ||||| | | || ||| || || || ||| |||| || Sbjct 1654 TTCGGCCATCGAAACTTATAACTTGTTGTCTGAGCGTTATTTTACACATGCCTCGCCCAC 1713 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 ||| ||||| || | ||||| |||| || ||||| ||| | | ||| Sbjct 1714 TTTGTTTGCTGCTGCTACCCCGCGACCACAATTGTCATCGTGCTTCCTTTTGACCATGGT 1773 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 || ||||| || || ||||| || | || | | | || || | |||||||| Sbjct 1774 GGCTGATTCTATTGAAGGTATTTTCAAGTCAGTGGAACAATGCGCCATGATTTCCAAATC 1833 Query 363687 TGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745 ||| || || ||||| | | || | ||| | | || || || || ||| | Sbjct 1834 TGCTGGTGGTATTGGCATTAACG-TGCACTGCATAAGGGCCAAGGGCACTTCCATCGATG 1892 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || ||| ||||| ||||| ||||||||| | |||||| ||||| ||| Sbjct 1893 GTACTAACGGCACCTCAAATGGACTGGTGCCCATGCTTAGGGTGTTTAACAATGTTGCCC 1952 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || || || || || || || || || ||| || ||||| || ||| | |||||| Sbjct 1953 GCTATGTAGATCAAGGCGGCGGCAAACGTCCAGGAGCATTTGCCATTTATTTGGAGCCTT 2012 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||| | ||||||||||| ||| | || | |||||| || || || || || Sbjct 2013 GGCATTCAGATATTTTTGAATTTTTGGATTTAAAGAAAAATACCGGCAAGGAAGAGCACA 2072 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || | ||||| |||||||| || ||| | | || |||||||| | || || | Sbjct 2073 GAGCTAGAGATCTATTCTATGCCCTGTGGATACCCGATTTGTTTATGAAAAGAGTAGAAG 2132 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | ||||||| | | || || ||| ||||||| ||||| || || |||| Sbjct 2133 AAAATGGAGATTGGTCGTTAATGTGTCCCCACAAATGTCCTGGTCTGCAGGAAGTTTGGG 2192 Query 364046 GTGACGACTATGTTG--CTCTATACGAAAAGTATGAATCGGAGGGAAAGGC---TCGTA- 364099 ||| || | | | | ||||| ||||||||| || || || || |||| Sbjct 2193 GTGCGGAATTCGAAGAATTGTATAC--CAAGTATGAAAATGAAGGCAAAGCAAACCGTAC 2250 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 | ||| || ||| || ||||||||||| || || | || | || ||||| | Sbjct 2251 CGTCAA----GGCCCAGGCTCTTTGGTTTGCCATAATTGAAGCTCAAGTAGAAACAGGTA 2306 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 | ||||| ||||||||||| ||| | || || || ||| |||||||| | |||| | Sbjct 2307 CTCCCTACATGTTGTACAAGGATGCCTGTAATCGTAAGAGTAACCAGCAAAATATTGGCA 2366 Query 364220 CAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | ||| || || ||| | ||||| || ||| | || || |||| ||||| |||| | Sbjct 2367 CTATTAAGTGCAGTAACTTGTGTACGGAAATTGTAGAGTATTCCGCACCCGATGAGATAG 2426 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTT 364308 |||| ||||| | || || || || ||| Sbjct 2427 CCGTGTGTAATTTGGCCTCAATAGCCCTT 2455 >seq91934 Length=4437 Score = 120 bits (132), Expect = 8e-22 Identities = 344/516 (67%), Gaps = 20/516 (4%) Strand=Plus/Plus Query 22141 GAAATTGATATTTCCACTGATAAGACGGATTGGCCAAAACTTACAGAAAACGAACAACAT 22200 ||| | ||| | || | ||||| |||| ||| |||||| || || || || | | Sbjct 2894 GAAGTAGATCTCTCTAAAGATAATTCGGACTGGGAAAAACTCACCGACAATGAGCGTTAC 2953 Query 22201 TTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTA 22260 |||||| | || |||| || ||||||||| | | || ||||| || ||| ||||| Sbjct 2954 TTTATCTCACATGTTCTGGCCTTCTTTGCTGCTTCCGATGGTATTGTCAATGAAAATCTT 3013 Query 22261 GTGACTAATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAA 22320 || |||| | || | ||| ||||||| | |||||||||||| | ||| Sbjct 3014 GTTGAACGTTTTTCCCAAGAGGTACAAGTTACAGAGGCACGCTGTTTCTATGGTTTCCAA 3073 Query 22321 ATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCT--ACAGTCACTCGTAG 22378 || || |||||||| ||| | |||| ||| ||| || | |||| || || Sbjct 3074 ATTGCCATGGAAAATGTACACTCTGAAATGTATAGTATTTTGATCGACAGCTACAT-TA- 3131 Query 22379 AAGATAAAGACGAACAACGAAACT---TATTCCGCGCGATTCGCACCATTCAATCAATTA 22435 ||||| ||||||||| | | | || || ||| || || | | | ||| Sbjct 3132 AAGATCG---CGAACAACGCGATTATCTCTTTAATGCCATTGAAACGATGCCAGCTGTTA 3188 Query 22436 AGAATAAGGCAGATTGGGCGCTGAAATGGAT--GAACAATGAACGTTCA--TTCGCGGAA 22491 || ||||| |||||||| || ||||| | ||| | || || || | ||| Sbjct 3189 AGCGCAAGGCCGATTGGGCAATGTCTTGGATTGGCTCAAA-ATCGGCCAATTTTGGTGAA 3247 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTG-TGCAA 22549 || ||||||||||||| | || || ||||||||||| ||| || ||||| | | | Sbjct 3248 CGCATTATTGCATTTGCCGCTGTGGAGGGCATTTTCTTCAGTGGCAG--TTTTGCTTCGA 3305 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | ||||||||||| ||||||| ||||||| || || || || || |||||||| ||| Sbjct 3306 TATTTTGGCTAAAGAAACGTGGTCTTATGCCTGGCCTTACATTCTCCAATGAGTTGATTT 3365 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGC-GTGT 22644 || || |||||| | ||| |||||||| |||| Sbjct 3366 CTCGTGACGAGGGTTTACATTGTGATTTTGCTGTGT 3401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300055337452820