Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq64788 104 2e-17 seq60894 98.7 8e-16 >seq64788 Length=4825 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || | || |||||||| |||||| | ||| || | | Sbjct 1587 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCC 1528 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | ||||| |||||| ||||||||||| | ||| ||||| Sbjct 1527 GACACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1468 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| || || ||||||| ||| Sbjct 1467 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1408 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 |||||||| |||||||| | ||| |||| || Sbjct 1407 ATTCAAAAGGAGTCTACCCTTCATTTGGTCTT 1376 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| || || || || | || || || ||||| ||| | || || || Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAA-CC 2216 Query 115343 AGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | | || ||| ||| | | || || |||||| ||||| || ||| | ||| || Sbjct 2215 ATCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGA 2156 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| ||| | || |||| ||| || |||||| | ||||| | || || ||||||| Sbjct 2155 TCAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTA 2096 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||||||||| |||||| | ||| |||| Sbjct 2095 CAACATTCAAAAAGAATCTACTCTTCATTTGGT 2063 >seq60894 Length=6180 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 109229 ATCCCAAATACGCAACGGAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCTCGTGGTT 109288 |||| ||||||| | ||| || |||||||| || | ||| ||||||||| | | Sbjct 2131 ATCCGGAATACGCCATTGAAACGGCTCGTTTGCGTACCTATGCCGAATGGCCTAGAAATA 2190 Query 109289 TGAAACAGCAACCCGATAAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAGGGCGATA 109348 |||||||| |||||| | ||||||||||||| || || | ||| || || ||||||| Sbjct 2191 TGAAACAGAAACCCGCTCAACTAGCCGAGGCTGGCTTCTTTTATACTGGAGTGGGCGATC 2250 Query 109349 AAACCAAATGTTTTTATTGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGATGAGCCGT 109408 ||| ||||| |||| |||||| | ||||| ||||| | | | ||||| || | Sbjct 2251 GTGTCAAGTGTTTCAGCTGTGGTGGCGGTCTTAAAGATTGGGATGAGAATGATGAACCCT 2310 Query 109409 GG 109410 || Sbjct 2311 GG 2312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424320131861200