Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq125840 86.0 5e-12 seq64788 84.2 2e-11 >seq125840 Length=3442 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||| | ||||| |||||||| || |||||||||| || ||| | || Sbjct 749 AGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCT 690 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||||||||| || || | || | || ||||| || || | || |||||||| Sbjct 689 TCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCT 630 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | |||||| ||||| ||||| ||| ||||| Sbjct 629 TGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTC 570 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || | |||||||| || |||||||| Sbjct 569 TTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq64788 Length=4825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||||| ||||| || || || |||||||| ||||| || | || || |||| || Sbjct 1834 TACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTC 1893 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGC 16845 ||||||||| || || |||| | || ||||| || ||| | || || ||||| Sbjct 1894 CAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTG 1953 Query 16846 AATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || || | | | ||| ||| ||||| |||| |||||||||| Sbjct 1954 AATTTTAGCT--TTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTT 2011 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| || |||||||| || ||||| Sbjct 2012 TTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404112891154900