Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq41982 535 5e-147 seq91934 289 4e-73 seq39385 93.3 5e-14 >seq41982 Length=5201 Score = 535 bits (592), Expect = 5e-147 Identities = 1497/2277 (66%), Gaps = 28/2277 (1%) Strand=Plus/Minus Query 61839 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 |||| |||| || ||||| || | | | ||| ||||| || | | ||| ||||| | Sbjct 3365 CCTTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGC 3306 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | || |||| || |||| | || ||||| || || | ||| || | | Sbjct 3305 CGGTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGG 3246 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | || || | ||| ||||| | || ||||||||||||||||| || || | || || | Sbjct 3245 GTTCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTG 3186 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 62077 |||||| ||| | ||||| | ||| ||||||| || ||||| | || | |||| Sbjct 3185 CCATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACG-AATA 3127 Query 62078 TCTTCTGGAAGGTT-TGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 |||| |||| | | ||| || || || || | || | ||||| || || || Sbjct 3126 TCTTTGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTC 3067 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || || |||| ||||| | | || |||||| || | || | ||| |||| || | Sbjct 3066 ATTTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATA 3007 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 | |||||||| || | || | | || |||||||| |||||| || || | || Sbjct 3006 TTGAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGAT 2947 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 |||||||| ||||| ||||| || || || ||||| |||||||| |||| | ||| | Sbjct 2946 TCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAA 2887 Query 62315 TTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62373 |||| | ||| | |||| ||||||| ||||| | | ||| ||||| | ||| | Sbjct 2886 TTTCGTACACCATGCTGTT-TGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGT 2828 Query 62374 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62433 || |||||| || || ||||| | | || ||| Sbjct 2827 AGGAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATA 2768 Query 62434 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62493 || || || || ||| ||| || | | ||||||||| || || ||||| || ||||| Sbjct 2767 AGTTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATA 2708 Query 62494 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATT 62553 ||| |||||||| || | | ||||| ||| | ||| || | || || Sbjct 2707 AATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGGGGAAACG 2648 Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613 | | ||| || | ||| || | || || ||||| || || ||||| | ||| | Sbjct 2647 CATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAG 2588 Query 62614 ATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 |||||| |||| || || || | ||||||| | ||||| ||||| ||||| |||||| Sbjct 2587 ATTAGA--TTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGA 2530 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA-- 62729 ||| || ||| ||||| |||| || | ||| ||| || ||| || Sbjct 2529 TTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGC 2470 Query 62730 -TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 | |||||||| || | || | || |||| |||||| ||||||| ||||| | | Sbjct 2469 GTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTGCG 2410 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | ||| | || || || || || | ||||| ||||| || || || | |||||| || Sbjct 2409 GAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGG 2350 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 |||||||| ||||| |||||||| || | ||| | |||||||| ||||| | ||| Sbjct 2349 TTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGA 2290 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTC 62967 | ||| || || || ||| | | | ||||| | || | |||| | | || Sbjct 2289 GCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGCCTTCA 2230 Query 62968 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGG 63027 | |||| || ||||||||| |||||| || | |||||||| | | ||| ||||| Sbjct 2229 T-TTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGG 2171 Query 63028 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63087 ||||| | |||||||| |||||||| ||||| | || | |||| ||||||||| | Sbjct 2170 ACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAA 2111 Query 63088 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 ||| || ||||| || || ||| ||||||||||| | ||| || || || || || |||| Sbjct 2110 ATCGGGTATCCACAGGGC-ATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTAT 2052 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 | || || | ||| | || | | |||||| |||||||| || ||||| || ||||| | Sbjct 2051 TTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAA 1992 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 |||| || |||||| || || ||||||| || | || || ||| | || | Sbjct 1991 ATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCC 1932 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 | | ||| || | | ||||| || || || || || || ||| | | || ||| Sbjct 1931 TAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGG 1872 Query 63327 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 | | || | | | || || || || || || || ||| || || | ||||| Sbjct 1871 CCCTTATGCAGTGCACGTTAAT--GCCAATACCACCAGCAGATTTGGAAATCATGGCGCA 1814 Query 63385 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 | ||| | | | | || || || ||| |||| ||| |||| | | || || || Sbjct 1813 TTGTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCA 1754 Query 63445 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 |||| ||| | || || | ||| ||| || || || || || || ||||| Sbjct 1753 CGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAA 1694 Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 | ||||| | | || || || || || || || ||||| || | ||| || Sbjct 1693 ATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTAT 1634 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 |||| || || | ||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct 1633 ACCTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTT 1574 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 || ||| |||||| | |||| || || || |||||||| ||||| |||||| || || Sbjct 1573 CAGCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCACGATC 1514 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 63744 |||||||| ||| || | || || || | || |||| | || ||||| Sbjct 1513 ATAAATAATGGACGAATTCAAACGTTCTGCATTCTTCTGCACCACAT-TGTAGTGATACT 1455 Query 63745 -TGAAATAATAGG-AAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCC 63802 ||||| || || || | || ||| | | | | || ||||| | | | ||| Sbjct 1454 CCGAAATCATGGGCGAAGTTTTACCCGTCTCTTTG-TTAACATAATGATACAGATCACTT 1396 Query 63803 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 63862 || || || ||||| |||||| ||||| ||||| | ||| || ||||| || | ||| Sbjct 1395 ATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGGCAATACGAGCC 1336 Query 63863 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 63922 || | ||||||||||| ||| | ||| || | || || ||| | |||||||||| | Sbjct 1335 GCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCTCGGCTGCCAAA 1276 Query 63923 GTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATT 63982 ||||||| ||| ||||| |||||| |||| || | |||||| |||| | || Sbjct 1275 TTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTGATAACTTTCAGTGTAATG 1216 Query 63983 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTG 64042 | || || | | ||| | ||||| ||||| || | ||| |||||||||||| Sbjct 1215 GCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAATACGAGATGTA 1156 Query 64043 ATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64098 |||||||| || ||| || | || ||| |||| |||||||| ||||||| ||| Sbjct 1155 ATTTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAAACAATTT 1100 >seq91934 Length=4437 Score = 289 bits (320), Expect = 4e-73 Identities = 506/727 (70%), Gaps = 17/727 (2%) Strand=Plus/Minus Query 32476 CCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535 |||||||| | ||| | ||| || |||||||| |||||| ||||| || ||||| Sbjct 3584 CCAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAAT 3525 Query 32536 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 32595 |||| || || | || || || | ||| | || | || ||||||||||| || | Sbjct 3524 TCATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAG 3465 Query 32596 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 32655 | || ||||| || ||| | | || || || | | | |||||||||||||| Sbjct 3464 CTTCCGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACA 3405 Query 32656 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 | || ||| || ||||| || |||| ||||||||| | | ||| || || ||||| || Sbjct 3404 TTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAAT 3346 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 || || || ||||| || ||||| || || ||||||||||| || ||||| ||| Sbjct 3345 GTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTG 3286 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC 32833 |||||||| || || || || ||||| ||||||| | || ||| || ||| | | | Sbjct 3285 AAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTT 3226 Query 32834 ATGT--ATCCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||||| | || |||||||||||||| || ||| ||||| || || Sbjct 3225 GAGCCAATCCAAGACATT---GCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCA 3169 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || |||||||||||||| | || | | |||||||| || | || ||||||| | Sbjct 3168 ATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATA 3109 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||||||||||| || || | ||||| ||||| ||||| || || ||||| || | ||| Sbjct 3108 CTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCC 3049 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 || |||| ||||| ||| |||| ||||| | | ||||||||| || || || || Sbjct 3048 TCTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCG 2989 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTAGT 33125 || ||||| || |||| |||||| ||||| || | | ||| |||| ||| Sbjct 2988 GAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTC-GGTG--AGT 2932 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 || | ||| || |||||||||| | ||| |||||||| || |||||||| ||||| Sbjct 2931 TTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCT 2872 Query 33186 TCTGCCT 33192 || |||| Sbjct 2871 TCAGCCT 2865 >seq39385 Length=6125 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27521 TCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATATGTGTA 27580 || ||||| || ||||| |||||||| |||||||| || || || | |||||| ||| || Sbjct 2567 TCTTTGACTTGGGTTAAAGATCTCCAGTCCATATTTGCACTGCCCAGATAAATGTGTTTA 2626 Query 27581 TTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 27619 || || || |||||||||||||| || | ||| |||||| Sbjct 2627 TTGTCCGAAATCCAAAATTTTGTGTGTAAAACACCTCCT 2665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632067641796000