Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq177482 131 1e-25
seq125840 131 1e-25
seq64788 131 1e-25
>seq177482
Length=2829
Score = 131 bits (144), Expect = 1e-25
Identities = 151/201 (75%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| ||||| || || || |||| ||||| ||||||| | || || || | ||
Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| |||| |||| || | ||| ||||||||||| |||||||| ||
Sbjct 1487 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCACCAGA 1542
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| || || | |||||||| || || ||||| ||||||| |||||| | ||| ||
Sbjct 1543 TCAGCAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTA 1602
Query 25175 CAATATTCAAAAAGAATCCAC 25195
|||||||||||||||||| ||
Sbjct 1603 CAATATTCAAAAAGAATCAAC 1623
>seq125840
Length=3442
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||||| || ||||| |||| || | ||||| ||| | |
Sbjct 538 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGCCTTAC 597
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| |||||| ||||||||||| ||||| || || |||
Sbjct 598 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 657
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || || ||||| |||||||| ||||||| |||||| || ||| ||||||
Sbjct 658 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAT 717
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| |||||||| ||||||| || ||
Sbjct 718 ATCCAAAAGGAATCCACCTTACATTTGGTACT 749
>seq64788
Length=4825
Score = 131 bits (144), Expect = 1e-25
Identities = 158/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || ||| ||||||| | || || ||| | ||
Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| ||||| || | || |||| |||| ||| ||||| ||||| || || || ||
Sbjct 1983 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GACAAGGAAGGAATCCCTCCAGAT 1927
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | ||||| ||||| |||||||| ||||| | ||||| || ||||||
Sbjct 1926 CAACAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTAC 1867
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||| ||||||||||| || | ||||| ||
Sbjct 1866 AATATACAAAAAGAATCTACATTGCATTTGGT 1835
Score = 131 bits (144), Expect = 1e-25
Identities = 161/218 (74%), Gaps = 8/218 (4%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| || || || || ||||||| | || || || | ||
Sbjct 2272 AATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCATC 2213
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||| ||||| || |||| | || |||| ||| || || || || ||||| || |
Sbjct 2212 TGATACTATTGAAAATGTCA---AGGCTAAAATTCAA-GATAAGGAGGGCATTCCCCCAG 2157
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| ||||| || | ||||||||||| |||||| | ||||| | |||||| || |||||
Sbjct 2156 ATCAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATT 2097
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||| |||||||||||||| || || ||||| || |||
Sbjct 2096 ACAACATTCAAAAAGAATCTACTCTTCATTTGGTTCTA 2059
Score = 122 bits (134), Expect = 8e-23
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || ||| ||||||| | ||||| || | |||
Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || | || |||| |||| ||| || || ||||| ||||| || |||
Sbjct 331 GACACCATTGAA--AATGTTAAAGCTAAAATTCAG-GATAAGGAAGGTATTCCCCCAGAC 275
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | || || ||||| || || || ||||||| || ||| || |||||||
Sbjct 274 CAGCAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTAC 215
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||||||||| || ||||| || || || ||
Sbjct 214 AATATTCAAAAGGAGTCCACTCTCCACTTGGT 183
Score = 109 bits (120), Expect = 5e-19
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || || || || || || ||| | || ||| | || || || | ||
Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCG 1756
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || | || |||| |||| || ||||||||||| ||||| || ||
Sbjct 1755 GATACCATAGAA--AATGTTAAAGCTAAAATCCAA-GACAAAGAAGGTATTCCCCCAGAT 1699
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | ||||| || || |||||||| ||||||| || || || |||||||
Sbjct 1698 CAACAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTAC 1639
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| || |||||||| || || || || || ||
Sbjct 1638 AACATCCAAAAAGAGTCGACCCTTCACTTGGT 1607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432284913150650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |