Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq177482 131 1e-25 seq125840 131 1e-25 seq64788 131 1e-25 >seq177482 Length=2829 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || || || |||| ||||| ||||||| | || || || | || Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | ||| ||||||||||| |||||||| || Sbjct 1487 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCACCAGA 1542 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | |||||||| || || ||||| ||||||| |||||| | ||| || Sbjct 1543 TCAGCAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTA 1602 Query 25175 CAATATTCAAAAAGAATCCAC 25195 |||||||||||||||||| || Sbjct 1603 CAATATTCAAAAAGAATCAAC 1623 >seq125840 Length=3442 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| || ||||| |||| || | ||||| ||| | | Sbjct 538 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGCCTTAC 597 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| ||||| || || ||| Sbjct 598 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 657 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| |||||||| ||||||| |||||| || ||| |||||| Sbjct 658 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAT 717 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| ||||||| || || Sbjct 718 ATCCAAAAGGAATCCACCTTACATTTGGTACT 749 >seq64788 Length=4825 Score = 131 bits (144), Expect = 1e-25 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| ||||||| | || || ||| | || Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| ||||| ||||| || || || || Sbjct 1983 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GACAAGGAAGGAATCCCTCCAGAT 1927 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| ||||| |||||||| ||||| | ||||| || |||||| Sbjct 1926 CAACAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTAC 1867 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| ||||||||||| || | ||||| || Sbjct 1866 AATATACAAAAAGAATCTACATTGCATTTGGT 1835 Score = 131 bits (144), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| || || || || ||||||| | || || || | || Sbjct 2272 AATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCATC 2213 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| ||||| || |||| | || |||| ||| || || || || ||||| || | Sbjct 2212 TGATACTATTGAAAATGTCA---AGGCTAAAATTCAA-GATAAGGAGGGCATTCCCCCAG 2157 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | ||||||||||| |||||| | ||||| | |||||| || ||||| Sbjct 2156 ATCAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATT 2097 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||||||||||||| || || ||||| || ||| Sbjct 2096 ACAACATTCAAAAAGAATCTACTCTTCATTTGGTTCTA 2059 Score = 122 bits (134), Expect = 8e-23 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || ||| ||||||| | ||||| || | ||| Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| ||| || || ||||| ||||| || ||| Sbjct 331 GACACCATTGAA--AATGTTAAAGCTAAAATTCAG-GATAAGGAAGGTATTCCCCCAGAC 275 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || || ||||| || || || ||||||| || ||| || ||||||| Sbjct 274 CAGCAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTAC 215 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||| || ||||| || || || || Sbjct 214 AATATTCAAAAGGAGTCCACTCTCCACTTGGT 183 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || || || || || ||| | || ||| | || || || | || Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCG 1756 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| || ||||||||||| ||||| || || Sbjct 1755 GATACCATAGAA--AATGTTAAAGCTAAAATCCAA-GACAAAGAAGGTATTCCCCCAGAT 1699 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| || || |||||||| ||||||| || || || ||||||| Sbjct 1698 CAACAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTAC 1639 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || |||||||| || || || || || || Sbjct 1638 AACATCCAAAAAGAGTCGACCCTTCACTTGGT 1607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432284913150650