Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq91934 367 1e-96
seq76621 127 2e-24
seq72928 127 2e-24
seq131565 107 2e-18
>seq91934
Length=4437
Score = 367 bits (406), Expect = 1e-96
Identities = 510/709 (72%), Gaps = 4/709 (1%)
Strand=Plus/Minus
Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|| || | ||||||||||||||| || || | |||||||| | ||||||||| || |
Sbjct 3573 AACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATC 3514
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
| | || || | ||| ||||| ||||| |||| || ||| || ||||| | |
Sbjct 3513 AAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATT 3454
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTT-TTGTACGACATAATTGTACATTAAGCAC-G 93095
||||| ||| ||| || | ||| ||||| | || || ||||||| ||| |
Sbjct 3453 ATTTCGGTTATTCT-CTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAA-CACAG 3396
Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155
|||| || ||||||||| ||||| || || |||||||||||| |||||| | || |
Sbjct 3395 CAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAG 3336
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | || || |||||||| ||||||||||| ||||||||||| ||| || || || |
Sbjct 3335 GCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGC 3276
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
| ||||| || |||||||| | ||| ||||| ||||||| || || || || ||||
Sbjct 3275 CCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCAATCC 3216
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335
| | ||||||||||| || ||||| | || | ||||| || || ||||| |
Sbjct 3215 AAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGA 3156
Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395
| ||||| || | || |||| ||||| | ||||| || | | |||||||||||
Sbjct 3155 GATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAG 3096
Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455
| || ||||| ||||| ||||||||||| || |||||||| | || || || | || |
Sbjct 3095 AGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTA 3036
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
| ||||| ||||| | || || |||||||||||||| ||||||||||| || ||||| |
Sbjct 3035 CCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGA 2976
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATA 93575
| |||| | ||| ||||| | ||||| || | || || ||||| || ||
Sbjct 2975 AGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAAT 2916
Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|||||| || ||||| |||||||| ||||||||||| |||||||| ||
Sbjct 2915 TATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAGC 2867
>seq76621
Length=2127
Score = 127 bits (140), Expect = 2e-24
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319
|| |||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 1670 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 1729
Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348
|||||||||||||||||||||||||||||
Sbjct 1730 AGCGTGGGTTCGAACCCCACACCTGACAA 1758
Score = 111 bits (122), Expect = 2e-19
Identities = 72/78 (92%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 877 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 936
Query 126323 GTGGGTTCGAACCCCACA 126340
||||||||||||||||||
Sbjct 937 GTGGGTTCGAACCCCACA 954
>seq72928
Length=2620
Score = 127 bits (140), Expect = 2e-24
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 1131 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1190
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||||||||||||||||||||||
Sbjct 1191 GTGGGTTCGAACCCCACACCTGACAAA 1217
>seq131565
Length=1964
Score = 107 bits (118), Expect = 2e-18
Identities = 71/78 (91%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 875 AGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 934
Query 126323 GTGGGTTCGAACCCCACA 126340
||||||||||||||||||
Sbjct 935 GTGGGTTCGAACCCCACA 952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555485980292400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |