Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq91934 367 1e-96 seq76621 127 2e-24 seq72928 127 2e-24 seq131565 107 2e-18 >seq91934 Length=4437 Score = 367 bits (406), Expect = 1e-96 Identities = 510/709 (72%), Gaps = 4/709 (1%) Strand=Plus/Minus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 || || | ||||||||||||||| || || | |||||||| | ||||||||| || | Sbjct 3573 AACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATC 3514 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | | || || | ||| ||||| ||||| |||| || ||| || ||||| | | Sbjct 3513 AAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATT 3454 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTT-TTGTACGACATAATTGTACATTAAGCAC-G 93095 ||||| ||| ||| || | ||| ||||| | || || ||||||| ||| | Sbjct 3453 ATTTCGGTTATTCT-CTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAA-CACAG 3396 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || ||||||||| ||||| || || |||||||||||| |||||| | || | Sbjct 3395 CAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAG 3336 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || || |||||||| ||||||||||| ||||||||||| ||| || || || | Sbjct 3335 GCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGC 3276 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 | ||||| || |||||||| | ||| ||||| ||||||| || || || || |||| Sbjct 3275 CCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCAATCC 3216 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | | ||||||||||| || ||||| | || | ||||| || || ||||| | Sbjct 3215 AAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGA 3156 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||||| || | || |||| ||||| | ||||| || | | ||||||||||| Sbjct 3155 GATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAG 3096 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || ||||| ||||| ||||||||||| || |||||||| | || || || | || | Sbjct 3095 AGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTA 3036 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | ||||| ||||| | || || |||||||||||||| ||||||||||| || ||||| | Sbjct 3035 CCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGA 2976 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATA 93575 | |||| | ||| ||||| | ||||| || | || || ||||| || || Sbjct 2975 AGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAAT 2916 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 |||||| || ||||| |||||||| ||||||||||| |||||||| || Sbjct 2915 TATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAGC 2867 >seq76621 Length=2127 Score = 127 bits (140), Expect = 2e-24 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 1670 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 1729 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||||| Sbjct 1730 AGCGTGGGTTCGAACCCCACACCTGACAA 1758 Score = 111 bits (122), Expect = 2e-19 Identities = 72/78 (92%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 877 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 936 Query 126323 GTGGGTTCGAACCCCACA 126340 |||||||||||||||||| Sbjct 937 GTGGGTTCGAACCCCACA 954 >seq72928 Length=2620 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1131 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1190 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 1191 GTGGGTTCGAACCCCACACCTGACAAA 1217 >seq131565 Length=1964 Score = 107 bits (118), Expect = 2e-18 Identities = 71/78 (91%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 875 AGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 934 Query 126323 GTGGGTTCGAACCCCACA 126340 |||||||||||||||||| Sbjct 935 GTGGGTTCGAACCCCACA 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555485980292400