Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq64788 129 5e-25 seq125840 100 2e-16 seq177482 93.3 4e-14 >seq64788 Length=4825 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || |||| ||||||||||| ||| |||| || || | Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| |||||| ||||| ||||| | || |||||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 1924 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || |||||||||||||| || || | ||||| ||| Sbjct 1923 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 1864 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||||||||||||||||| | ||||| || || ||| |||| ||||||| Sbjct 1863 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCA 1815 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || || |||| || ||||| |||||| | ||| ||||| | Sbjct 1587 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCC 1528 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | ||||| |||||| || |||||||| ||||| |||||| Sbjct 1527 GACACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1468 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| || || ||||||| || Sbjct 1467 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1408 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||| || ||||| || || ||||| |||||||| Sbjct 1407 ATTCAAAAGGAGTCTACCCTTCATTTGGTCTTACGTCTCCGCGGTGG 1361 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| || || || || | || ||||| ||||| ||| | || ||||| Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| || ||| | || || |||||| || || || ||| ||||| ||| Sbjct 2214 TCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGAT 2155 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | || |||| ||| || |||||| | ||||| ||| || ||||||| Sbjct 2154 CAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTAC 2095 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||||||||| || ||||| || | ||||| || ||||| Sbjct 2094 AACATTCAAAAAGAATCTACTCTTCATTTGGTTCTACGTCTTCGTGGTGG 2045 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || || |||| ||||||||||| ||| ||||| ||||| Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| || || ||||| ||||| || || Sbjct 331 GACACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAGGAAGGTATTCCCCCAGACCAG 272 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || || || ||||||||| ||| || ||||||| ||| Sbjct 271 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAAT 212 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| || || || || || || || |||||||| || ||||||| Sbjct 211 ATTCAAAAGGAGTCCACTCTCCACTTGGTATTGCGTCTCCGTGGTGGCA 163 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | || || ||||| ||||| | || ||||| Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCG 1756 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| ||||| ||||||||||| ||||| |||||| Sbjct 1755 GATACCATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1696 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| || || ||||||||||||||| || || ||||||| || Sbjct 1695 CAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1636 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || || || || || || ||||| |||||||| Sbjct 1635 ATCCAAAAAGAGTCGACCCTTCACTTGGTCTTACGTCTCCGCGGTGG 1589 >seq125840 Length=3442 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240 ||| | ||||| || || |||||||| | || || || ||||||||| ||||| || Sbjct 532 TTATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAG 591 Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300 || ||| | ||| | || || ||||| ||||||||||| ||||| Sbjct 592 CCTTACGACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCA 651 Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||||||| | | || | || || ||||||||||||||| | || || |||| Sbjct 652 GATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGAC 711 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| ||||| || ||||||| || | ||||| || ||||| Sbjct 712 TACAATATCCAAAAGGAATCCACCTTACATTTGGTACTCCGTCTTCGTGGTGG 764 >seq177482 Length=2829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || |||||||| |||| || || ||||| || | || |||||| Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || ||| || ||| ||||||||||| |||| ||||| Sbjct 1487 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 1546 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||| | | |||| ||| || || |||||||||||| || | ||| | |||| || | Sbjct 1547 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTT--CCGACTACA 1604 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||||||||||| ||| | || || || ||||| || || ||||| Sbjct 1605 ATATTCAAAAAGAATCAACATTGCACTTGGTATTGCGCCTTCGTGGTGG 1653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422021677942000