Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq41982 300 1e-76 seq125840 147 2e-30 seq64788 147 2e-30 seq177482 132 4e-26 seq91934 86.0 5e-12 >seq41982 Length=5201 Score = 300 bits (332), Expect = 1e-76 Identities = 1028/1576 (65%), Gaps = 50/1576 (3%) Strand=Plus/Minus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 ||| ||||| ||||||| ||||| | ||||| || || || | |||||| |||||||| Sbjct 3364 CTTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGCC 3305 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 || || || || |||||| | | | ||||| | |||||| ||||| |||| Sbjct 3304 GGTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGGG 3245 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 || | || | ||||| || || ||||||||||| || || | ||| |||||||| || Sbjct 3244 TTCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTGC 3185 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| ||| | || || || ||||| || || || || || || | | | Sbjct 3184 CATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACGAATATC 3125 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 ||| || ||||| || ||| || | |||| || | ||||||| ||||| ||| Sbjct 3124 TTTGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTCAT 3065 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTG 129137 | || | | | || ||| | ||||| | ||| | | || | | | Sbjct 3064 TTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATATT 3005 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 || || |||| | || || | ||||| ||| ||| | |||||||| ||||| Sbjct 3004 GAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGATTC 2945 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCGAG 129255 ||| ||||| || ||||| || || | || |||||||| |||| |||||| | Sbjct 2944 ATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAG--AA 2887 Query 129256 TTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACA--TCGATG 129313 ||||| | ||| |||||||| || | | ||| || | |||||||| ||||| ||| | Sbjct 2886 TTTCGTACACCATGCTGTTTGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCG--G 2829 Query 129314 TGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTG----GAA 129369 | || || | |||||||| |||||||| | ||| ||| ||| | || | | || Sbjct 2828 TAGGAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGAT 2769 Query 129370 AAGTAGGAATCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAATGCGC 129427 |||| || | | | | || |||||| | |||||| ||||| ||||||||||||| Sbjct 2768 AAGTT----TCATA-AGGACCTA-GCTTTTCGGACAATTCACAACTAGCTTCCAATGCGC 2715 Query 129428 CAAAATAAATTGTTTCGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTAC 129486 || ||||||| |||||| ||||| | || || |||| |||| ||||||||||| Sbjct 2714 CATAATAAATAGTTTCGAAAATTT-GTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAG 2656 Query 129487 GGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGA 129546 || | ||||| | ||||||||||| | ||| || | ||| | || || || ||| Sbjct 2655 GGGAAACGCATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGA 2596 Query 129547 TGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTG 129606 || | ||| ||||| ||| | || ||||| |||| |||||||| |||||| Sbjct 2595 TGACGTAGATTAGATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTG 2536 Query 129607 TTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCT 129666 || | ||| ||| | | ||| || || | |||||| | | ||| | | | | Sbjct 2535 TTGAGATTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTT 2476 Query 129667 ACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCG 129726 || | ||| ||||| ||| | || ||||||||||| || ||||| | || Sbjct 2475 TCA--GGCGTC-ACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCA 2419 Query 129727 TTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAA 129786 | | ||||| |||||||| | ||||| ||||| ||||| ||||| | | Sbjct 2418 TCGGGTGCGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATA 2359 Query 129787 TGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTT 129846 | | || ||||| || || || ||||| ||||||| |||||| || || || ||| Sbjct 2358 TTTTGCTGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTT 2299 Query 129847 TCGACTTGCGTTTCGACAATGG---TCCTGAACAAGTCTCGAGCCTTGA---TCTGTCTT 129900 || ||||| | ||| | |||| || || || || | ||||||| | | || Sbjct 2298 TCTACTTGAGCTTCAATTATGGCAAACC--AAAGAGCCT-GGGCCTTGACGGTACGGTTT 2242 Query 129901 ACAAATTTGCC-ACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTAC 129959 | |||||| ||||| || || ||||| || ||| ||||| | || || Sbjct 2241 GC---TTTGCCTTCATTT-TCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAAC 2186 Query 129960 --GGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCG 130017 || || || || ||| | |||||||| || ||| ||||| |||| Sbjct 2185 TTCCTGCAGACCA--GGACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCT 2128 Query 130018 ACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTC 130075 |||| |||||||||||||||||||| ||||||||| || || | ||||| || || | | Sbjct 2127 ACTCTTTTCATAAACAAATCGGGTATCCACAGGGCATAGAATAGATCTCTAGCTCTGTGC 2068 Query 130076 TATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACG 130135 | | | || || || | ||| | | ||| || || |||| || | ||||| | Sbjct 2067 TCTTCCTTGCCGGTATTTTTC-TTTAAATCCAA-AAATTCAAAAATATCTGAATGCCAAG 2010 Query 130136 GTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCA 130192 | || | |||||| || | ||| || ||||| ||| ||||| || || | ||| Sbjct 2009 GCTCCAAATAAATGGCAAATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGG 1950 Query 130193 CGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCT 130252 | ||||||| | || | | ||| | | ||| ||| || | |||||||| || | | Sbjct 1949 CAACATTGTTAAACACCCTAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCAT 1890 Query 130253 CAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATT 130312 | ||| || |||| |||| | | || ||| | | || || || || || ||| Sbjct 1889 CGATGGAAGTGCCCTTGGCCCTTATGCAGTGCACGTTAATGCCAATACCACCAGCAGATT 1830 Query 130313 TTGATATCAACGCGCA 130328 | || |||| ||||| Sbjct 1829 TGGAAATCATGGCGCA 1814 >seq125840 Length=3442 Score = 147 bits (162), Expect = 2e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || || || ||||||||||| ||||| || | || | ||||| || Sbjct 533 TATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGC 592 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | ||| ||| | || || |||| ||||| |||||||| || |||||||| || | Sbjct 593 CTTACGACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAG 652 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 ||||||||||| | || || ||||| ||||| || || ||| |||||| | ||||| | Sbjct 653 ATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACT 712 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| || ||||| ||||||||| ||||||| || Sbjct 713 ACAATATCCAAAAGGAATCCACCTTACATTTGGT 746 >seq64788 Length=4825 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || ||||| || || || |||| | || || ||| | Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || |||| ||||||||||| |||||||| ||||| || ||| Sbjct 2214 TCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGAT 2155 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||||| || |||||||| ||||| | || || ||||| | ||||||||| Sbjct 2154 CAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTAC 2095 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| || | ||||| ||| | || | || || ||| Sbjct 2094 AACATTCAAAAAGAATCTACTCTTCATTTGGTTCTACGTCTTCGTGGTGGT 2044 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||| ||||| || ||||| | || | || || ||| | | Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCG 1756 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||| |||||||| || |||||||| || |||||| Sbjct 1755 GATACCATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1696 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || || ||| || || | |||||||||||| Sbjct 1695 CAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1636 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||| || ||| | || || || || || | ||||| ||| Sbjct 1635 ATCCAAAAAGAGTCGACCCTTCACTTGGTCTTACGTCTCCGCGGTGGT 1588 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || ||||| |||| | || || || | || Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||||||||| || || || || |||||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 1924 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| ||||| || || || ||||| | || |||||||| Sbjct 1923 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 1864 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||| || | ||||| || || || ||||| || || Sbjct 1863 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 1817 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || || || || ||||| | || | ||||| ||| | || Sbjct 1587 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCC 1528 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||||||||| || || |||||||| || |||||| Sbjct 1527 GACACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1468 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||| || || ||| || || | |||||||||||| Sbjct 1467 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1408 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | ||||| || || || | ||||| ||| Sbjct 1407 ATTCAAAAGGAGTCTACCCTTCATTTGGTCTTACGTCTCCGCGGTGGT 1360 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || || || || ||||| |||| | ||||| ||| | | Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| |||||||| || ||||| |||||||| || || || Sbjct 331 GACACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAGGAAGGTATTCCCCCAGACCAG 272 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || ||||| || ||| ||| || | ||||||||||| Sbjct 271 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAAT 212 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| || ||||| | || || || ||||| Sbjct 211 ATTCAAAAGGAGTCCACTCTCCACTTGGTATTGCG 177 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||||||||| || || ||||| |||| | ||||| || | || Sbjct 163 ATGCAAATCTTCGTTAAAACTTTGACTGGCAAAACTATCACATTGGAAGTAGAGCCTTCC 104 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||||| || || ||||| || ||||| || ||||| Sbjct 103 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGATAAGGAAGGCATTCCCCCGGATCAG 44 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 |||||| | || || || || || ||||| || ||| ||||| Sbjct 43 CAACGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCA 1 >seq177482 Length=2829 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || ||||| || |||||||||| || ||| || | Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 1487 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 1546 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || || || || ||| ||||| | ||||| ||||| Sbjct 1547 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTACAAT 1606 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | || || || ||||| | || || ||| Sbjct 1607 ATTCAAAAAGAATCAACATTGCACTTGGTATTGCGCCTTCGTGGTGGT 1654 >seq91934 Length=4437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117059 ACGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCAT 117118 |||||| || || || ||| ||| || ||||||||||| |||||||||||| | || Sbjct 3247 ACGCATTATTGCATTTGCCGCTGTGGAGGGCATTTTCTTCAGTGGCAGTTTTGCTTCGAT 3306 Query 117119 ATTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATC 117178 ||||| | |||| ||||| ||||| || || || || ||| || || || || Sbjct 3307 ATTTTGGCTAAAGAAACGTGGTCTTATGCCTGGCCTTACATTCTCCAATGAGTTGATTTC 3366 Query 117179 GCGTGACGAAGGTTTACACACCGATTTTGC 117208 |||||||| |||||||| |||||||| Sbjct 3367 TCGTGACGAGGGTTTACATTGTGATTTTGC 3396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418717650433150